Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.0e-71 272.3 134 100.0
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.5e-68 262.7 135 97.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.1e-63 246.5 139 91.4
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.8e-54 215.3 147 75.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.2e-47 193.4 140 75.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.9e-35 152.1 131 60.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 6.8e-32 141.0 132 57.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-31 139.8 130 56.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.7e-30 136.3 130 56.9
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-29 133.7 125 56.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-29 133.7 126 55.6
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.4e-29 133.3 131 55.7
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.2e-29 132.1 126 54.8
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.2e-29 132.1 134 58.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.1e-29 131.7 132 54.5
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 9.2e-29 130.6 131 54.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.2e-28 130.2 131 53.4
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.5e-28 128.6 130 55.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.6e-28 128.3 126 54.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.0e-28 127.9 130 53.8
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.0e-27 127.1 134 55.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.0e-27 127.1 134 52.2
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.7e-27 126.3 129 53.5
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.3e-27 125.9 139 51.8
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.3e-27 125.9 129 53.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.0e-27 125.6 130 51.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 3.9e-27 125.2 136 51.5
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 5.0e-27 124.8 129 55.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 5.0e-27 124.8 135 52.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 6.6e-27 124.4 132 50.8
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.5e-26 122.5 133 51.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.5e-26 122.5 132 50.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.3e-26 122.1 135 53.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 5.6e-26 121.3 131 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 7.3e-26 120.9 127 52.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.5e-26 120.6 136 55.9
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.2e-25 120.2 127 52.0
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.6e-25 119.8 142 49.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.1e-25 119.4 127 51.2
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-25 119.0 135 51.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 3.6e-25 118.6 125 52.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 6.2e-25 117.9 140 48.6
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.2e-25 117.9 132 50.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.1e-24 117.1 126 54.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.3e-24 115.9 125 50.4
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.1e-24 115.5 125 51.2
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.2e-24 114.8 128 46.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 6.8e-24 114.4 128 51.6
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.2e-23 113.6 126 52.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.0e-23 112.8 137 52.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.4e-23 111.7 125 49.6
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.4e-23 111.7 125 49.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 7.5e-23 110.9 123 52.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.8e-23 110.5 128 47.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.8e-23 110.5 130 49.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.8e-23 110.5 133 48.9
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.8e-23 110.5 133 48.9
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-22 110.2 125 49.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.7e-22 109.8 130 46.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.2e-22 109.4 123 52.8
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.4e-22 107.8 128 44.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.3e-22 107.5 132 48.5
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.3e-22 107.5 132 48.5
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.1e-21 107.1 137 49.6
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-21 106.7 132 48.5
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.4e-21 105.9 137 46.7
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.2e-21 104.0 104 53.8
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-20 103.6 151 43.0
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-20 102.8 102 53.9
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.5e-20 102.1 131 48.1
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.5e-20 102.1 137 48.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 3.5e-20 102.1 121 48.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.6e-20 101.7 129 45.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 117 48.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 119 47.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.3e-19 99.4 124 45.2
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.3e-19 99.4 124 46.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.3e-19 99.4 132 45.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.0e-19 99.0 142 43.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.9e-19 98.6 124 44.4
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.9e-19 98.6 124 46.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 8.6e-19 97.4 132 45.5
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-18 97.1 125 51.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.1e-18 97.1 129 47.3
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.5e-18 96.7 123 46.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-18 96.3 122 45.1
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.9e-18 96.3 127 45.7
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.5e-18 95.9 128 48.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.3e-18 95.5 132 45.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.3e-18 95.1 125 48.8
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.3e-18 95.1 134 45.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 4.3e-18 95.1 124 46.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.6e-18 94.7 129 44.2
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 5.6e-18 94.7 140 42.9
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 9.5e-18 94.0 133 42.1
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.5e-18 94.0 129 45.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 48.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.2e-17 93.6 129 45.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.2e-17 93.6 116 46.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.6e-17 93.2 123 48.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-17 92.8 131 44.3
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.1e-17 92.8 149 44.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.1e-17 92.8 125 44.0
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.8e-17 92.4 125 47.2
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.8e-17 92.4 129 45.7
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.6e-17 92.0 133 45.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-17 91.3 133 45.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 8.1e-17 90.9 128 43.0
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 8.1e-17 90.9 128 43.0
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 8.1e-17 90.9 126 42.9
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.4e-16 90.1 137 44.5
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.4e-16 90.1 137 44.5
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-16 90.1 130 40.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 47.2
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 47.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.1e-16 89.0 124 46.8
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 3.1e-16 89.0 146 39.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.1e-16 89.0 94 53.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 6.8e-16 87.8 121 44.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 8.9e-16 87.4 119 47.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-15 86.7 126 47.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.0e-15 86.3 126 46.0
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-15 85.9 129 42.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.6e-15 85.9 126 46.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.4e-15 85.5 129 42.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.4e-15 85.5 134 43.3
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.4e-15 85.1 132 44.7
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.6e-15 84.3 121 43.8
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.7e-14 83.2 129 43.4
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.9e-14 82.4 128 39.1
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.9e-14 82.4 129 41.9
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 3.7e-14 82.0 124 44.4
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 128 40.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-13 80.5 128 42.2
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-13 80.5 135 39.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.9e-13 79.7 122 44.3
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.9e-13 79.7 126 42.9
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.4e-13 79.3 125 44.0
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.4e-13 78.2 122 43.4
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.1e-13 77.8 119 42.9
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 9.2e-13 77.4 88 50.0
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 9.2e-13 77.4 88 50.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-12 76.6 147 37.4
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.1e-12 76.3 155 35.5
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.7e-12 75.9 144 39.6
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.5e-12 75.5 122 39.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.5e-12 75.5 171 32.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-11 72.8 122 40.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.9e-11 72.0 132 40.2
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.1e-11 71.6 165 38.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-10 70.5 143 39.2
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-10 70.5 120 40.8
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.5e-10 70.1 72 51.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 5.6e-10 68.2 137 37.2
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 9.6e-10 67.4 117 38.5
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-09 67.0 82 46.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.2e-09 64.7 70 48.6
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 8.1e-09 64.3 72 47.2
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.4e-08 62.8 160 32.5
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 1.5e-07 60.1 123 38.2
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 2.2e-06 56.2 146 31.5
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.8e-06 55.5 103 39.8


User provided reference genes

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