Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 0.0e+00 1446.8 721 100.0
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 0.0e+00 1352.0 721 94.0
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 0.0e+00 1251.9 725 85.4
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 0.0e+00 1211.1 630 94.8
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 0.0e+00 1198.0 717 81.9
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 0.0e+00 1178.3 712 80.9
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 8.1e-265 917.1 701 64.1
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.9e-264 914.1 713 67.3
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.9e-262 907.9 696 64.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 3.5e-260 901.7 694 64.7
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.3e-254 883.2 699 61.2
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 6.1e-252 874.4 757 58.1
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-249 866.7 707 60.0
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 9.0e-248 860.5 710 61.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.5e-247 859.8 701 60.6
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.6e-247 859.0 723 59.5
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.5e-247 858.2 698 59.6
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.7e-247 857.4 703 62.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.7e-246 856.3 700 60.6
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.2e-246 855.9 703 59.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.1e-245 853.6 710 60.8
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.2e-245 851.7 700 60.0
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.3e-243 845.9 703 60.3
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.0e-243 845.5 697 59.7
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 3.9e-243 845.1 658 62.3
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-242 843.6 702 60.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.3e-242 841.6 707 59.5
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 4.3e-242 841.6 697 59.4
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.1e-240 837.0 696 59.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.3e-240 834.7 695 58.8
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 6.9e-240 834.3 704 60.4
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 9.1e-240 833.9 733 57.7
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.5e-239 833.2 733 57.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.6e-239 832.4 729 59.3
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.9e-237 826.2 700 59.6
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 3.2e-237 825.5 697 60.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 4.2e-237 825.1 700 59.7
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.6e-236 822.0 699 57.7
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.8e-235 819.7 764 54.5
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 2.3e-235 819.3 707 58.6
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 5.1e-235 818.1 716 58.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.5e-234 816.6 699 57.7
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.4e-234 815.1 695 58.4
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 9.7e-234 813.9 700 58.0
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.8e-233 811.6 695 58.6
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 4.8e-233 811.6 619 64.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.4e-232 809.3 704 58.7
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 3.1e-232 808.9 696 58.2
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.3e-232 808.1 725 57.0
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 5.3e-232 808.1 702 58.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 7.0e-232 807.7 696 56.6
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 7.0e-232 807.7 698 58.9
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.2e-231 807.0 695 57.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.5e-231 805.4 722 56.5
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 8.5e-230 800.8 697 59.0
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 2.3e-227 792.7 712 56.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 9.7e-226 787.3 741 54.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.3e-225 786.9 674 57.9
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.7e-225 786.6 699 56.8
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.2e-225 786.2 741 54.7
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 4.8e-225 785.0 667 57.4
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 6.3e-225 784.6 703 58.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.3e-225 784.6 657 59.1
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.6e-223 780.0 651 59.9
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.6e-223 780.0 699 56.4
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.0e-223 779.6 719 55.2
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.7e-223 777.7 713 55.8
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.0e-222 777.3 700 57.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 4.4e-218 761.9 718 55.2
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.8e-217 759.2 701 55.1
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.7e-217 758.8 701 54.4
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 6.3e-217 758.1 701 54.5
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 8.3e-217 757.7 705 55.9
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-216 757.3 702 56.0
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.8e-216 756.5 707 55.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.4e-216 756.1 702 55.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.4e-216 756.1 724 53.6
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 3.1e-216 755.7 700 54.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.1e-216 755.7 701 54.2
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.7e-215 752.7 704 55.5
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 7.2e-213 744.6 684 54.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.8e-211 740.0 701 53.6
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 6.8e-211 738.0 703 54.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 8.8e-211 737.6 679 55.4
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.5e-210 736.9 576 62.2
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 7.0e-208 728.0 732 51.2
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 7.7e-207 724.5 748 52.9
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.9e-201 705.3 727 50.2
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.3e-198 697.2 716 49.4
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.7e-198 696.8 709 49.4
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 7.8e-191 671.4 702 49.3
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.1e-187 661.0 652 54.8
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.2e-183 647.5 696 48.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.4e-176 623.2 681 49.9
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.1e-176 621.7 547 56.7
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.7e-169 600.5 712 44.4
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.1e-167 593.6 567 54.1
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 5.1e-158 562.4 472 57.8
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 4.6e-127 459.5 494 50.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.4e-123 447.2 689 39.2
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.0e-122 444.1 365 60.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.7e-121 441.0 399 57.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.9e-121 440.3 733 34.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 3.7e-116 423.3 652 39.3
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.5e-114 416.4 774 35.9
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 6.3e-108 396.0 431 50.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.0e-106 391.0 700 33.3
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.6e-103 380.2 758 34.0
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 7.5e-101 372.5 690 34.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-100 371.7 748 33.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.1e-99 367.1 344 54.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.0e-77 294.7 283 55.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.7e-73 281.6 332 46.4
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.6e-63 248.4 556 31.8
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 9.9e-53 212.6 356 36.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-52 211.8 140 71.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.7e-52 211.8 139 70.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.6e-50 205.3 191 53.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-45 188.3 177 55.9
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 3.8e-44 184.1 166 54.2
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.1e-38 166.0 459 29.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.1e-31 141.7 128 47.7
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-30 139.0 125 56.8
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.5e-28 130.2 77 80.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.2e-27 127.9 77 77.9
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 7.4e-24 116.7 103 49.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.9e-21 107.1 75 60.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.8e-15 88.2 397 24.9
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 7.2e-11 73.6 69 50.7
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.3e-07 62.8 87 43.7
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 4.8e-07 60.8 130 33.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.1e-06 59.7 60 53.3
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 9.1e-06 56.6 41 63.4


User provided reference genes

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