Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 2079.3 1072 100.0
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 2065.4 1072 99.3
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1905.6 1144 87.8
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1864.4 1096 89.1
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1690.2 1077 80.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1686.8 1077 81.2
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1663.3 1088 79.0
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1646.3 1075 79.5
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1641.7 1080 78.0
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1632.5 1078 78.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1628.2 1079 77.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1628.2 1078 78.1
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1625.5 1080 78.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1624.8 1077 78.3
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1620.1 1072 77.9
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1620.1 1080 77.3
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1618.6 1080 77.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1612.4 1078 77.7
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1609.3 1077 77.0
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1607.0 1080 76.7
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1604.3 1080 76.9
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1601.6 1077 77.3
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1599.3 1077 75.8
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1588.5 1080 76.5
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1576.6 1080 75.6
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1576.6 1077 76.2
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1575.5 1080 75.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1573.9 1080 75.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1572.8 1074 76.0
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1572.0 1077 75.6
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1570.1 1074 76.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1568.5 1077 75.1
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1562.7 1074 75.5
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1562.7 1075 76.1
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1561.6 1086 75.2
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1035 78.0
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1558.1 1051 77.5
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1556.6 1077 75.3
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1074 75.3
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1102 74.4
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1548.5 1083 74.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1547.3 1076 74.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1545.0 1074 75.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1539.6 1074 75.2
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1537.3 1072 74.3
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1536.2 1076 73.3
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1535.8 1089 74.3
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1528.5 1072 74.5
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1524.6 1075 74.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1522.7 1080 73.1
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1519.6 1076 73.9
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1518.8 1080 72.5
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1516.5 1084 74.2
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1509.6 1076 73.6
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1496.5 1073 72.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1491.9 1073 72.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1487.2 1072 71.8
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1480.7 1073 71.3
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1476.5 1073 71.9
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1469.1 1072 71.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1088 70.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1467.2 1088 70.4
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1465.3 1073 70.9
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1084 70.3
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1457.2 1107 69.0
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1456.4 1072 73.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1453.3 1092 69.6
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1451.0 1076 70.0
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1446.8 1107 68.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1443.3 1073 70.6
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1441.0 947 79.0
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1073 70.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1434.1 1002 75.0
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 1074 70.4
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1432.5 1060 70.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1429.8 1092 68.8
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1424.1 1061 70.3
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1421.8 1096 68.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1421.4 1092 68.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1410.6 1076 69.0
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1407.1 993 73.7
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1402.9 1126 68.1
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1401.3 1092 68.0
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1399.0 1188 65.1
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1396.7 1072 68.6
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1389.8 1079 67.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1384.8 1089 68.7
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1384.0 1077 69.1
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1375.9 1116 66.7
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1371.7 1111 67.5
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1368.6 1152 66.5
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1354.0 1068 65.1
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1339.3 1076 67.2
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1328.5 1068 64.8
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1327.4 1046 67.6
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1325.8 1175 64.3
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1321.6 1074 65.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1310.8 1099 63.5
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1306.2 1069 66.2
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1305.0 1022 66.7
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1290.4 1249 59.2
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1265.0 1064 65.1
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1229.5 882 73.5
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1221.5 1063 63.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1220.3 1079 62.9
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1181.4 905 67.6
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1178.7 744 82.0
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1110.9 915 65.9
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.1e-301 1039.3 978 60.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.4e-297 1026.5 1081 52.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.6e-296 1021.5 1095 51.8
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 3.6e-293 1011.9 726 74.0
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 3.6e-277 958.7 837 63.9
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.0e-275 953.0 632 78.0
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.3e-271 940.3 558 88.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 5.6e-270 934.9 1094 49.3
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.3e-263 913.7 517 90.9
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 8.7e-255 884.4 1056 47.4
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.6e-254 880.9 1078 46.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 7.9e-240 834.7 776 61.6
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.4e-220 770.8 567 73.2
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 5.9e-219 765.4 561 71.3
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 3.5e-211 739.6 395 95.7
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 9.4e-209 731.5 706 58.2
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 6.1e-208 728.8 584 67.6
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.0e-195 687.2 842 50.6
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 5.0e-194 682.6 1227 37.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.0e-191 674.9 808 48.9
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.3e-186 657.1 536 66.2
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.7e-170 604.4 431 71.9
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.8e-150 536.2 373 75.6
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.7e-136 490.3 392 65.6
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.4e-135 488.4 356 73.0
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.9e-132 478.0 350 70.9
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.6e-129 465.7 366 69.4
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.2e-116 424.1 351 66.7
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 5.5e-116 423.3 320 69.7
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 2.0e-105 388.3 283 70.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 3.7e-104 384.0 273 73.3
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.5e-97 359.8 365 54.8
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 4.5e-94 350.5 228 78.1
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 7.7e-78 296.6 178 80.9
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.6e-67 262.3 194 73.7
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 3.6e-59 234.6 176 70.5
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 6.8e-58 230.3 143 77.6
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.4e-57 227.6 162 70.4
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.2e-54 219.5 130 81.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 7.3e-52 210.3 129 83.7
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 9.9e-49 199.9 137 70.1
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.9e-48 197.6 108 89.8
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.4e-39 169.5 131 67.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 9.6e-36 156.8 169 55.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.1e-35 155.6 96 79.2
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 5.3e-34 151.0 100 73.0
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.9e-32 144.4 85 78.8
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-31 142.9 111 69.4
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.9e-31 142.5 111 64.0
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.1e-30 139.0 87 74.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 3.9e-29 134.8 86 70.9
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-27 129.8 92 73.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.6e-27 129.4 86 74.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.6e-27 128.3 200 34.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-25 122.9 79 70.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.0e-25 122.5 87 74.7
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 7.6e-25 120.6 81 66.7
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-23 116.3 81 69.1
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 2.8e-19 102.1 100 55.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 2.6e-17 95.5 83 62.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 2.6e-17 95.5 83 62.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.9e-16 92.0 62 75.8
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.9e-16 92.0 62 75.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.1e-15 90.1 71 64.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.2e-15 88.6 49 87.8
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.5e-12 79.0 58 69.0
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 8.2e-11 73.9 48 77.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 5.3e-10 71.2 53 67.9
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.6e-09 68.9 51 72.5
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.9e-07 62.8 52 55.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 7.9e-06 57.4 38 68.4


User provided reference genes

Program Settings