Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.6e-141 506.1 266 100.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.1e-140 501.1 266 98.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.4e-134 483.0 266 95.9
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 1.0e-116 423.7 263 84.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-116 421.8 260 85.0
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.8e-113 412.9 264 83.0
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-112 410.2 260 81.5
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.9e-73 280.0 265 57.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.2e-73 279.3 266 55.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.1e-73 278.9 266 55.3
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 5.4e-73 278.5 265 55.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 7.1e-73 278.1 264 56.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.0e-71 274.2 262 59.2
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 6.6e-71 271.6 266 54.5
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 6.6e-71 271.6 262 55.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 5.6e-70 268.5 268 53.0
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 6.2e-69 265.0 265 54.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.4e-68 263.8 203 66.5
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.4e-68 263.1 205 66.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 3.1e-68 262.7 265 56.6
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.9e-68 261.5 262 52.7
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.0e-68 261.2 265 54.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.0e-67 260.0 262 52.3
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 4.4e-67 258.8 203 66.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.9e-67 257.7 262 52.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.9e-66 256.1 262 51.9
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.4e-66 255.0 263 52.5
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.4e-65 253.8 267 50.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 7.1e-65 251.5 262 51.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.2e-64 250.8 267 53.9
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.2e-64 250.8 277 49.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.2e-64 250.8 266 51.5
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.7e-64 249.6 262 50.8
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.7e-64 249.6 270 53.0
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.7e-64 249.6 265 51.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.5e-64 249.2 268 52.2
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.5e-64 249.2 268 51.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 3.5e-64 249.2 262 51.9
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.6e-64 248.8 267 50.9
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.0e-63 247.7 267 51.3
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.0e-63 247.7 268 51.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.0e-63 247.7 262 51.1
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.7e-63 246.9 275 50.9
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 3.9e-63 245.7 269 50.2
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.6e-63 245.0 264 50.4
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.5e-62 243.8 261 49.8
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.9e-62 243.4 268 50.7
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 7.3e-62 241.5 264 50.8
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.6e-62 241.1 262 54.2
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 9.6e-62 241.1 262 51.9
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.8e-61 239.6 266 51.9
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 3.6e-61 239.2 271 50.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.8e-61 238.8 274 47.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 4.8e-61 238.8 277 49.5
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.1e-60 237.7 268 48.5
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.1e-60 236.1 268 50.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.1e-60 236.1 267 50.2
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 6.9e-60 235.0 265 50.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.2e-59 234.2 268 49.6
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-59 233.4 234 53.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.5e-59 232.3 234 52.1
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 5.8e-59 231.9 273 47.6
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 8.4e-58 228.0 268 48.9
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-57 227.3 247 50.6
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.6e-56 223.8 202 59.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.6e-56 223.8 202 59.4
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.1e-56 223.4 270 48.5
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.7e-56 223.0 263 47.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 4.6e-56 222.2 263 47.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 7.9e-56 221.5 202 58.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.8e-55 220.3 246 50.8
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.8e-55 220.3 262 45.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.3e-55 219.9 202 58.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 5.1e-55 218.8 264 45.5
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 6.7e-55 218.4 227 54.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.1e-54 217.6 262 46.2
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 7.4e-54 214.9 269 49.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.1e-53 213.4 265 46.0
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 3.7e-53 212.6 261 47.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.8e-53 212.2 261 47.5
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 6.2e-53 211.8 265 46.4
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.8e-52 210.3 267 47.6
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.4e-52 209.9 267 43.8
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.0e-51 206.8 264 46.6
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.5e-51 205.7 265 46.0
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 7.6e-51 204.9 260 45.0
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.3e-50 204.1 262 46.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.2e-50 203.4 265 47.5
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.9e-50 203.0 264 45.1
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.8e-50 202.6 264 44.7
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 8.4e-50 201.4 260 44.6
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.1e-49 201.1 260 44.6
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.1e-49 201.1 267 45.7
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.9e-49 200.3 262 45.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.9e-49 200.3 264 45.8
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.4e-49 199.9 224 52.7
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 2.4e-49 199.9 263 43.7
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.5e-49 198.7 264 45.1
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.5e-49 198.7 264 45.1
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.3e-49 198.0 266 43.2
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 9.3e-49 198.0 266 43.2
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 9.3e-49 198.0 262 45.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 9.3e-49 198.0 263 44.1
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.2e-48 197.6 265 45.3
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.6e-48 197.2 260 44.6
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.6e-48 197.2 260 44.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 4.6e-48 195.7 170 56.5
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.0e-47 194.5 260 40.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.0e-47 194.5 261 44.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.8e-47 193.7 260 42.3
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 3.0e-47 193.0 266 42.9
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 5.1e-47 192.2 260 44.2
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 5.1e-47 192.2 263 47.1
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 5.1e-47 192.2 263 44.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.1e-46 191.0 264 42.4
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.3e-46 189.5 260 43.1
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.3e-46 189.5 263 44.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.3e-45 187.6 267 40.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 4.8e-45 185.7 260 43.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 6.2e-45 185.3 158 58.9
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.2e-45 185.3 257 42.8
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.4e-44 183.3 271 41.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 5.3e-44 182.2 270 41.5
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 6.9e-44 181.8 266 44.4
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.4e-43 179.5 265 43.0
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.5e-43 179.1 262 39.3
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 8.4e-42 174.9 267 40.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.1e-41 171.8 265 41.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 3.0e-39 166.4 267 39.7
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 2.8e-37 159.8 255 38.4
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 5.3e-36 155.6 262 37.8
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 6.9e-36 155.2 257 35.8
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 7.6e-35 151.8 274 35.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.3e-34 151.0 170 47.1
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.0e-34 149.1 128 57.8
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.5e-33 146.7 116 56.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 9.3e-33 144.8 156 45.5
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 9.3e-33 144.8 262 36.3
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-32 144.1 105 61.9
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.8e-31 140.6 150 46.0
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 2.5e-30 136.7 116 56.0
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.3e-30 136.3 218 40.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 5.0e-26 122.5 123 49.6
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.2e-24 117.9 164 43.9
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.0e-23 114.8 108 49.1
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.8e-23 114.0 81 69.1
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-16 91.3 68 64.7
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.3e-15 87.0 188 33.0
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.3e-14 83.2 94 42.6
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.4e-14 82.8 282 26.2
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 3.7e-13 79.7 104 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.4e-12 77.8 301 25.6
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 6.5e-10 68.9 255 27.5
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-08 64.3 94 35.1


User provided reference genes

Program Settings