Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 1.4e-50 202.6 100 100.0
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.1e-49 198.7 100 96.0
PGSC0003DMG400027332 Solanum tuberosum HOM05D021137 ORTHO05D004438 2.5e-39 165.2 100 84.0
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 2.1e-38 162.2 100 81.0
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 8.9e-37 156.8 100 80.0
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 4.8e-22 107.8 85 67.1
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.2e-12 76.6 96 46.9
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 4.5e-12 74.7 97 46.4
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 7.6e-12 73.9 97 45.4
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.1e-10 70.1 103 40.8
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.9e-10 69.3 99 43.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.2e-10 68.6 70 50.0
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.2e-09 66.6 71 46.5
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.6e-09 66.2 88 40.9
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-09 66.2 109 39.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.1e-09 65.9 71 46.5
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.1e-09 65.9 71 46.5
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 2.1e-09 65.9 74 51.4
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 4.6e-09 64.7 77 45.5
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 2.3e-08 62.4 61 50.8
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.0e-08 62.0 90 42.2
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 3.0e-08 62.0 96 40.6
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.7e-08 60.8 72 50.0
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.7e-08 60.8 72 50.0
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.7e-08 60.5 72 50.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 8.7e-08 60.5 94 39.4
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 8.7e-08 60.5 77 45.5
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-07 60.1 57 50.9
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.1e-07 60.1 114 36.8
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.1e-07 60.1 114 36.8
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-07 59.7 90 41.1
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.5e-07 59.7 74 43.2
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.9e-07 59.3 80 43.8
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-07 59.3 80 43.8
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-07 59.3 80 43.8
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 2.5e-07 58.9 59 47.5
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-07 58.9 78 44.9
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-07 58.9 75 42.7
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.5e-07 58.9 75 42.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 2.5e-07 58.9 73 45.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 3.3e-07 58.5 120 35.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 3.3e-07 58.5 59 47.5
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.3e-07 58.2 63 49.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 5.7e-07 57.8 80 41.2
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.7e-07 57.8 75 42.7
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 5.7e-07 57.8 71 42.3
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 7.4e-07 57.4 59 47.5
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.6e-07 57.0 77 40.3
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.3e-06 56.6 59 45.8
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.3e-06 56.6 85 37.6
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-06 56.2 84 40.5
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.6e-06 56.2 98 37.8
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-06 56.2 118 34.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.1e-06 55.8 74 40.5
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.8e-06 55.5 72 40.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.8e-06 55.5 73 39.7
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.7e-06 55.1 62 48.4
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.7e-06 55.1 82 43.9
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 4.8e-06 54.7 84 38.1
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.8e-06 54.7 74 41.9
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.2e-06 54.3 56 46.4
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.2e-06 54.3 56 46.4
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 6.2e-06 54.3 79 41.8
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 8.2e-06 53.9 76 39.5


User provided reference genes

Program Settings