Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 3.0e-285 984.6 519 100.0
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 5.1e-269 930.6 519 95.8
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 3.2e-263 911.4 520 93.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 7.6e-196 687.6 519 73.4
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.6e-188 662.5 518 72.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 9.6e-183 644.0 507 71.8
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.3e-67 260.8 597 37.2
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.3e-67 260.8 537 39.5
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 9.0e-64 248.8 533 36.2
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 3.4e-63 246.9 535 37.0
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 5.8e-63 246.1 550 36.4
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.2e-62 244.2 534 36.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 3.8e-62 243.4 528 35.6
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 4.9e-62 243.0 565 34.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.4e-61 241.5 545 38.2
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 4.6e-60 236.5 528 37.9
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 4.6e-60 236.5 529 36.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.8e-59 234.6 550 35.5
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 8.7e-59 232.3 554 35.4
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.1e-58 231.9 555 33.5
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 9.6e-58 228.8 543 35.0
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 9.6e-58 228.8 532 35.9
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.6e-57 228.0 545 35.2
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.7e-57 226.9 556 35.1
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.4e-56 224.2 553 34.2
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.4e-56 224.2 553 34.7
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 3.1e-56 223.8 528 36.0
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-56 223.4 534 34.8
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 9.0e-56 222.2 549 34.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.2e-55 221.9 538 35.3
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.8e-55 219.5 534 34.6
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 7.6e-55 219.2 526 35.6
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 9.9e-55 218.8 519 34.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 1.7e-54 218.0 543 33.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 4.9e-54 216.5 540 33.9
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 6.4e-54 216.1 528 36.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 8.4e-54 215.7 142 76.8
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.2e-53 213.8 543 32.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 4.2e-53 213.4 518 35.5
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.2e-52 211.8 517 35.0
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 7.9e-52 209.1 540 33.3
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-51 208.8 540 33.7
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.8e-51 208.0 542 31.4
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.5e-50 204.9 541 31.6
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.9e-50 204.5 552 34.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 5.6e-50 203.0 529 32.3
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.4e-50 202.6 537 32.0
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.4e-50 202.6 530 34.5
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.3e-49 201.8 552 32.4
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.1e-48 198.7 523 33.1
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.0e-48 196.8 531 32.8
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 4.0e-48 196.8 530 32.8
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 5.3e-48 196.4 515 34.4
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 5.3e-48 196.4 537 32.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.9e-48 196.1 557 31.6
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 9.0e-48 195.7 525 33.1
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 7.6e-47 192.6 525 32.8
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 7.1e-45 186.0 548 31.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 9.3e-45 185.7 525 33.9
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.2e-44 185.3 546 31.3
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.6e-44 184.9 537 32.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.1e-44 184.5 543 32.6
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 2.7e-44 184.1 524 31.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 2.7e-44 184.1 534 30.7
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.7e-44 184.1 522 33.1
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 4.6e-44 183.3 535 32.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.5e-42 178.3 540 30.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 1.9e-42 177.9 532 32.1
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 1.9e-42 177.9 575 31.7
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.5e-42 177.6 537 31.8
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.3e-41 175.3 511 33.3
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 2.8e-41 174.1 540 33.1
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 4.8e-41 173.3 535 31.8
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-40 171.8 537 30.9
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.8e-40 171.4 547 32.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 6.9e-40 169.5 264 41.7
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.0e-38 165.6 548 30.5
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.0e-38 165.6 549 30.6
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.7e-38 164.9 524 30.3
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 2.9e-38 164.1 529 31.0
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 6.5e-38 162.9 537 29.1
CAN.G42.6 Capsicum annuum HOM05D006793 ORTHO05D003476 8.5e-38 162.5 127 66.1
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.9e-37 161.4 545 31.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 9.3e-37 159.1 126 64.3
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 9.3e-37 159.1 268 44.8
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.6e-36 156.8 544 30.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 8.7e-35 152.5 525 31.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 8.7e-35 152.5 525 31.8
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.5e-34 151.8 550 29.1
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.3e-34 150.2 553 32.2
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 9.7e-34 149.1 557 29.3
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.3e-33 148.7 115 67.8
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.8e-33 147.5 264 40.9
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.8e-33 146.7 537 30.4
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 8.2e-33 146.0 543 29.1
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 2.4e-32 144.4 543 27.8
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 3.4e-31 140.6 520 30.6
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 7.7e-31 139.4 538 28.6
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 1.0e-30 139.0 228 43.9
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.3e-30 138.7 518 29.3
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.8e-30 137.1 549 28.4
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.4e-29 135.2 499 27.1
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 9.7e-26 122.5 114 57.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.2e-25 121.3 505 27.5
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 6.3e-25 119.8 93 63.4
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 3.1e-24 117.5 283 31.1
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 6.9e-24 116.3 359 30.9
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 9.4e-21 105.9 484 26.7
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.1e-20 104.8 224 37.5
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 6.1e-20 103.2 85 60.0
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 2.3e-19 101.3 68 67.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 3.0e-19 100.9 67 70.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 2.2e-17 94.7 239 33.9
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.4e-16 92.0 488 28.1
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 7.0e-16 89.7 355 27.9
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 1.6e-15 88.6 519 24.1
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 2.6e-15 87.8 319 30.1
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.3e-14 85.5 308 28.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 8.5e-14 82.8 90 47.8
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 2.1e-12 78.2 237 31.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.0e-11 74.3 79 43.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.5e-10 72.0 83 43.4
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.3e-10 70.9 73 47.9
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.5e-10 69.7 116 37.1
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.3e-09 68.9 157 33.1
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.7e-09 68.6 242 26.9
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 2.2e-09 68.2 76 43.4
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.2e-09 68.2 148 31.8
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.8e-09 67.0 41 78.0
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 6.3e-09 66.6 81 42.0
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 8.2e-09 66.2 218 26.1
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 8.2e-09 66.2 156 28.2
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 1.4e-08 65.5 93 34.4
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.4e-08 64.7 79 38.0
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.1e-08 64.3 285 26.7
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 4.1e-08 63.9 63 44.4
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 5.3e-08 63.5 63 41.3
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 5.3e-08 63.5 81 40.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 7.0e-08 63.2 75 40.0
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 9.1e-08 62.8 82 43.9
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.2e-07 62.4 80 33.8
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 1.2e-07 62.4 86 34.9
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.0e-07 61.6 75 38.7
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 2.7e-07 61.2 63 42.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 2.7e-07 61.2 63 44.4
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 2.7e-07 61.2 80 35.0
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.7e-07 61.2 219 25.6
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 2.7e-07 61.2 61 44.3
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.5e-07 60.8 76 39.5
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 4.5e-07 60.5 262 25.6
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.5e-07 60.5 71 36.6
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 4.5e-07 60.5 79 38.0
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.5e-07 60.5 187 27.3
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 5.9e-07 60.1 75 37.3
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 5.9e-07 60.1 185 28.1
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 7.7e-07 59.7 216 25.5
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 1.0e-06 59.3 56 42.9
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.3e-06 58.9 114 31.6
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.3e-06 58.9 116 32.8
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.3e-06 58.9 57 43.9
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.7e-06 58.5 254 19.7
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 2.9e-06 57.8 128 30.5
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 2.9e-06 57.8 60 41.7
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.9e-06 57.8 273 23.4
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 5.0e-06 57.0 50 46.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 5.0e-06 57.0 61 44.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 5.0e-06 57.0 60 36.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.5e-06 56.6 200 22.5
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 6.5e-06 56.6 78 41.0
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 8.5e-06 56.2 84 40.5
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 8.5e-06 56.2 209 23.4
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 8.5e-06 56.2 245 23.3


User provided reference genes

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