Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1693.3 851 100.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1685.2 851 99.5
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1484.2 869 85.6
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1384.8 887 80.4
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1368.2 739 92.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 0.0e+00 1330.5 736 91.6
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1300.0 853 76.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1276.2 856 73.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1269.6 850 73.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1266.9 851 73.9
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1246.1 848 74.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1234.6 907 69.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1225.3 854 71.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1217.2 849 71.6
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1216.4 857 70.6
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1213.0 857 70.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 851 70.9
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1205.7 855 70.5
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1201.4 850 70.6
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 849 70.3
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 830 71.1
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 836 70.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1191.0 857 69.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1189.9 854 70.5
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1180.6 848 69.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1178.7 848 69.3
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1177.9 853 70.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 858 69.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 957 64.3
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1173.7 851 69.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1170.6 848 68.8
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1169.8 854 69.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 854 69.0
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1165.6 876 67.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1163.3 857 68.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1162.9 815 72.0
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 853 68.2
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 836 69.5
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 834 69.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1155.6 856 68.6
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1155.6 852 68.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 851 67.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 852 67.7
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1154.0 850 68.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1152.5 857 68.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1152.1 831 69.2
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1150.2 852 67.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1150.2 855 67.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 856 68.6
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 856 68.6
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 855 67.6
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 850 68.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 856 68.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 864 67.1
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 857 67.1
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1140.9 867 68.2
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1137.9 853 66.5
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1133.2 881 65.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 848 66.6
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 870 66.4
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1119.8 870 66.2
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1115.1 851 66.5
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1111.7 853 66.6
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1110.1 856 66.0
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1108.6 824 67.5
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1107.8 754 73.2
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 851 66.5
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1105.9 765 71.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1102.4 849 66.0
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1099.7 868 65.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1099.0 763 70.9
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 854 64.9
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 855 65.1
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 938 61.6
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1094.7 854 65.0
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1094.7 837 65.6
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 727 73.7
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 949 61.5
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 838 65.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1085.9 858 64.3
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 858 64.9
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 870 63.7
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1075.1 847 64.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1075.1 837 65.2
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 5.8e-312 1073.9 908 62.4
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 1.4e-308 1062.8 761 69.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.7e-306 1055.8 845 63.7
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 8.6e-306 1053.5 857 63.6
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 4.7e-304 1047.7 851 62.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 4.7e-304 1047.7 851 62.3
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 5.2e-303 1044.3 855 62.8
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.9e-301 1038.5 851 62.4
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.4e-300 1036.2 827 63.8
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 3.3e-297 1025.0 702 72.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.6e-296 1021.5 850 61.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.4e-295 1019.6 851 60.9
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 5.2e-295 1017.7 847 61.9
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 6.8e-295 1017.3 850 61.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.0e-294 1015.8 1006 55.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 9.9e-294 1013.4 824 62.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.7e-293 1012.7 847 61.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.2e-293 1012.3 851 61.6
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.2e-293 1012.3 851 61.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.1e-289 1000.0 853 60.1
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.9e-281 972.6 850 59.5
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.2e-280 967.6 697 71.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.2e-280 967.6 786 62.3
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.7e-274 949.5 716 66.2
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.1e-271 938.7 787 61.5
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-268 929.9 837 58.7
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.2e-268 928.3 838 58.2
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.0e-266 923.7 718 64.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.2e-262 910.2 844 57.2
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 3.9e-242 842.0 849 54.1
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 7.4e-241 837.8 677 63.7
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.4e-238 828.9 755 62.6
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 6.3e-232 808.1 529 74.7
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.4e-226 790.4 774 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 9.7e-225 784.3 854 50.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.4e-207 726.5 536 68.3
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 6.8e-202 708.4 857 46.8
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.8e-200 703.0 873 46.8
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 7.8e-198 694.9 861 46.0
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.4e-191 673.3 474 71.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-166 591.3 453 67.1
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.5e-161 574.3 548 56.0
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 6.6e-157 558.9 759 46.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.6e-155 553.1 493 61.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.4e-154 551.2 814 42.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.4e-154 550.4 468 60.7
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 6.9e-154 548.9 466 60.3
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 7.6e-153 545.4 458 60.9
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.9e-152 543.5 386 70.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.4e-151 539.3 384 68.2
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.5e-124 450.7 460 53.5
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.5e-121 439.9 364 63.5
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 6.5e-120 436.0 352 64.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 5.5e-119 433.0 294 72.8
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 7.0e-114 416.0 384 55.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 3.2e-111 407.1 313 66.8
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 4.8e-107 393.3 290 67.2
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 2.0e-92 344.7 319 57.1
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.2e-85 320.1 201 76.1
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.5e-84 318.5 289 55.0
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.3e-79 300.4 245 61.6
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.0e-72 277.7 159 93.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 7.8e-65 253.1 185 63.8
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.2e-61 240.4 176 65.9
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.7e-59 235.3 155 74.2
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.0e-56 226.1 163 65.6
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.4e-45 189.1 269 42.8
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.3e-43 182.6 128 72.7
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.7e-43 182.2 492 29.9
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 7.1e-34 150.2 88 85.2
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.1e-30 138.7 128 60.9
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 4.8e-30 137.5 72 93.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.7e-27 129.0 114 57.9
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-26 126.3 120 60.8
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.0e-21 106.7 105 53.3
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.6e-20 105.1 75 70.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 9.3e-18 96.7 61 77.0
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 5.1e-16 90.9 60 73.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.5e-15 88.6 71 62.0
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 2.4e-13 82.0 69 60.9
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-07 62.8 83 45.8
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.5e-07 62.8 37 83.8
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-06 59.7 44 65.9


User provided reference genes

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