Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.9e-310 1068.1 729 100.0
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 6.0e-292 1007.3 730 95.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 9.1e-272 940.3 729 81.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-174 617.5 685 57.5
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.8e-164 583.2 684 56.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.7e-124 451.1 598 51.3
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.6e-121 439.1 580 50.9
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 6.6e-121 439.1 580 50.9
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.6e-114 416.4 612 47.2
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 6.8e-110 402.5 613 46.7
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-104 385.2 612 45.1
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 2.1e-98 364.4 586 46.2
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.5e-69 268.5 460 42.6
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 6.5e-68 263.1 467 42.2
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 2.1e-63 248.1 477 44.9
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.8e-62 245.0 695 34.0
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 4.5e-61 240.4 495 39.2
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 6.5e-60 236.5 497 39.8
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 3.2e-59 234.2 503 39.8
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.2e-58 232.3 434 42.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.0e-57 227.6 616 35.1
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.3e-55 222.2 482 39.4
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-55 221.5 512 38.1
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.8e-55 221.1 517 39.3
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 3.7e-55 220.7 525 39.8
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.1e-54 217.2 496 38.5
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.4e-53 214.2 487 38.2
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.0e-52 210.3 558 37.1
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 8.5e-52 209.5 485 37.5
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.4e-51 208.8 611 32.9
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 2.5e-51 208.0 483 38.1
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.2e-50 205.7 505 35.6
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 4.6e-50 203.8 499 38.3
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.6e-50 203.8 519 36.8
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 6.1e-50 203.4 518 36.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.4e-49 202.2 504 36.5
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.4e-49 202.2 551 34.5
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.4e-49 202.2 595 33.1
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 1.8e-49 201.8 485 36.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 3.0e-49 201.1 507 36.1
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.1e-49 200.3 526 37.3
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.1e-49 200.3 497 37.4
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.1e-48 199.1 499 37.7
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.1e-48 199.1 526 35.7
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.0e-48 198.4 497 37.2
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.6e-48 198.0 487 37.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 3.3e-48 197.6 540 36.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.4e-48 197.2 493 37.3
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 5.7e-48 196.8 483 37.3
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 9.7e-48 196.1 506 36.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.7e-47 195.3 487 35.3
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 2.2e-47 194.9 499 36.5
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 2.2e-47 194.9 630 32.9
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 3.7e-47 194.1 521 34.5
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 6.3e-47 193.4 464 38.4
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 6.3e-47 193.4 537 35.6
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.3e-47 193.4 526 35.4
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.8e-46 191.8 527 35.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 2.4e-46 191.4 503 36.8
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.1e-46 190.7 611 34.2
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 4.5e-45 187.2 521 37.0
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 5.9e-45 186.8 499 37.3
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.2e-44 184.9 499 37.5
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 5.0e-44 183.7 483 35.2
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 5.0e-44 183.7 553 34.7
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.1e-43 182.6 551 35.4
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.9e-43 181.8 479 34.7
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.9e-43 181.8 396 39.4
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 6.1e-42 176.8 475 35.2
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 2.3e-41 174.9 480 33.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.5e-40 172.2 492 34.8
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.5e-40 172.2 570 32.5
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.0e-40 171.8 479 34.4
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 2.6e-40 171.4 486 35.8
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.4e-38 165.6 294 42.5
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.4e-38 165.6 482 33.6
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.2e-37 162.5 324 40.7
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.5e-37 160.6 556 34.2
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.3e-36 159.1 504 31.9
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 8.5e-36 156.4 480 34.4
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.1e-35 156.0 484 33.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.5e-35 155.6 322 42.2
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.1e-34 151.8 656 28.4
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.7e-34 151.4 453 32.0
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.6e-34 151.0 504 35.7
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.0e-33 149.4 467 31.3
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.2e-32 146.0 484 33.7
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.0e-32 145.2 518 31.1
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.2e-31 141.7 441 33.3
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 4.8e-31 140.6 516 29.8
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.8e-31 140.6 506 31.0
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.1e-30 137.5 512 30.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 7.0e-30 136.7 489 28.6
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 9.1e-30 136.3 489 28.8
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.2e-29 136.0 500 29.6
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.5e-29 134.0 482 32.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 7.7e-29 133.3 593 29.3
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 5.0e-28 130.6 514 31.1
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.5e-27 128.3 480 30.2
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 9.4e-27 126.3 455 32.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.2e-26 125.9 249 37.3
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.7e-26 124.8 486 30.0
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 3.6e-26 124.4 487 28.3
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 3.6e-26 124.4 487 28.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 3.6e-26 124.4 466 29.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.0e-25 121.3 462 31.2
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 3.0e-25 121.3 458 31.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 5.7e-24 117.1 498 28.7
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 7.5e-24 116.7 504 28.6
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 4.8e-23 114.0 505 28.1
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.4e-22 112.5 457 30.9
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.4e-22 111.7 472 27.8
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 3.1e-22 111.3 421 30.6
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.4e-22 110.5 304 33.9
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 8.5e-20 103.2 464 29.7
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.2e-19 101.3 324 33.0
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.3e-17 95.1 280 35.7
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.8e-15 88.2 307 30.9
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.1e-14 86.3 202 39.6
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 7.8e-13 80.1 375 28.8
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 3.8e-12 77.8 256 33.2
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.6e-12 77.0 164 37.8
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-11 76.3 256 32.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 2.3e-09 68.6 365 27.1


User provided reference genes

Program Settings