Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 0.0e+00 1662.1 853 100.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 0.0e+00 1652.5 853 99.2
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 0.0e+00 1549.6 883 91.3
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 0.0e+00 1321.6 894 77.7
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 0.0e+00 1319.3 889 78.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 0.0e+00 1286.6 896 75.6
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 0.0e+00 1172.9 768 80.9
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.3e-249 865.1 876 54.6
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.7e-243 845.1 865 53.2
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.5e-241 840.1 862 53.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-234 816.6 880 51.4
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.7e-224 783.5 870 49.7
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 7.0e-223 778.1 890 49.9
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.6e-217 759.6 893 49.4
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.3e-213 747.3 944 47.5
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 6.6e-213 745.0 889 47.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.5e-212 743.8 906 49.4
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.1e-211 740.0 854 49.2
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.0e-209 733.4 791 51.6
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.6e-209 733.0 902 47.2
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 7.8e-206 721.5 880 46.7
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.5e-204 717.2 827 49.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 8.0e-203 711.4 890 46.9
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.8e-202 708.4 710 53.7
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 8.3e-200 701.4 914 45.7
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.1e-199 701.0 861 48.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.4e-199 700.7 882 46.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.0e-197 694.5 877 46.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.1e-196 691.0 866 46.7
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.3e-196 689.5 885 45.2
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.3e-196 689.5 863 46.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.3e-196 689.5 890 45.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 4.3e-196 689.1 886 45.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.5e-193 680.6 880 46.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.7e-192 676.0 894 45.2
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.9e-192 675.6 859 45.5
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.1e-191 674.5 859 45.6
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.2e-190 671.0 896 45.5
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 3.5e-190 669.5 861 44.9
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.7e-189 667.2 885 45.6
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 5.1e-189 665.6 888 45.9
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-188 663.3 865 44.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-188 663.3 874 45.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 2.5e-188 663.3 855 45.8
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 7.3e-188 661.8 882 44.1
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.6e-187 659.4 884 45.2
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.4e-185 652.5 862 45.1
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 7.5e-185 651.7 869 44.6
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.7e-184 650.6 937 43.5
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 8.3e-184 648.3 872 44.0
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.7e-182 643.3 898 43.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.3e-181 641.0 908 43.1
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.2e-179 634.4 876 43.6
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.8e-179 633.3 894 43.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.1e-179 631.7 729 48.7
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.4e-178 630.2 882 44.0
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 6.8e-178 628.6 877 43.8
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 5.8e-177 625.5 888 42.8
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.3e-176 624.4 897 44.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.1e-175 621.3 881 43.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 5.4e-175 619.0 789 44.9
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.6e-174 617.5 751 47.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 2.3e-173 613.6 872 41.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.5e-172 610.1 732 46.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 9.6e-172 608.2 884 42.3
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.3e-171 607.8 890 42.6
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.8e-171 605.9 803 45.3
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.1e-170 604.7 875 42.1
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.2e-169 601.3 901 41.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 4.2e-167 592.8 768 46.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 2.1e-166 590.5 804 45.0
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.7e-166 590.1 893 41.8
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 7.8e-166 588.6 862 42.2
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.1e-164 584.7 870 42.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 5.3e-162 575.9 621 50.4
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 6.4e-160 568.9 925 39.4
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.1e-159 568.2 813 42.8
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-158 564.3 673 46.4
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.3e-157 561.2 856 40.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.3e-157 560.5 884 39.6
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 6.7e-157 558.9 876 40.9
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.3e-156 556.6 675 45.5
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 3.3e-156 556.6 655 46.0
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 3.7e-155 553.1 870 40.3
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 6.2e-155 552.4 827 41.2
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 8.1e-155 552.0 840 40.1
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-154 551.6 810 41.7
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.1e-154 550.1 656 45.7
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.3e-154 549.3 810 41.6
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 6.9e-154 548.9 716 46.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 6.9e-154 548.9 645 47.8
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 6.9e-154 548.9 871 40.2
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-153 548.1 810 41.5
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.8e-153 545.8 760 43.0
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 5.8e-153 545.8 760 43.0
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 7.6e-153 545.4 655 45.3
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.9e-152 542.7 538 53.9
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.1e-151 541.6 797 41.9
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-151 541.2 808 41.3
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 7.9e-150 535.4 947 38.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.9e-150 535.4 678 43.5
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.3e-149 533.9 660 47.0
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.1e-147 527.3 889 39.9
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.6e-142 511.1 799 40.7
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 3.3e-140 503.4 903 39.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.0e-136 491.9 603 45.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.2e-129 468.4 663 40.9
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.7e-120 438.0 705 39.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.2e-120 437.6 705 38.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 6.5e-120 436.0 676 39.6
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 7.2e-119 432.6 353 62.0
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.7e-112 411.4 474 48.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.7e-112 411.4 474 48.1
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.5e-111 407.5 690 37.5
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 1.4e-106 391.7 792 37.4
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 6.5e-104 382.9 629 41.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.4e-103 379.0 524 43.5
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.6e-102 378.3 711 36.0
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.1e-102 376.3 667 38.8
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.3e-99 366.3 442 46.6
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.7e-96 358.2 334 56.3
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.5e-95 355.1 633 37.9
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.3e-95 354.0 744 35.3
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.3e-95 354.0 744 35.3
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.0e-94 349.4 633 37.4
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 4.9e-91 340.1 564 40.2
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.9e-87 328.2 274 56.2
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 3.2e-82 310.8 798 31.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.4e-76 290.8 802 30.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.6e-70 271.9 246 55.7
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.5e-63 248.1 792 29.3
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.4e-61 241.5 484 34.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.4e-60 237.7 302 44.7
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-59 235.7 222 53.2
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 7.8e-57 226.5 343 38.8
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.5e-55 222.2 516 35.3
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.3e-54 219.2 485 34.8
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.4e-50 205.7 141 68.1
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.8e-44 183.7 344 38.1
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 8.4e-43 179.9 141 58.2
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.1e-42 176.8 152 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 4.6e-41 174.1 333 36.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 4.6e-41 174.1 119 67.2
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 2.3e-40 171.8 176 52.3
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 6.7e-40 170.2 197 45.2
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.1e-38 165.2 369 35.5
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 2.1e-38 165.2 257 39.7
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.2e-36 159.5 117 63.2
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.2e-36 159.5 211 45.0
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 4.5e-36 157.5 91 90.1
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.9e-34 152.1 175 46.3
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.9e-34 152.1 230 38.7
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 6.0e-33 147.1 121 57.9
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.3e-32 146.0 304 37.2
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.3e-30 137.1 418 28.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.4e-29 136.0 211 42.2
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-26 124.0 102 52.0
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-26 124.0 102 52.0
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 9.3e-26 123.2 149 43.6
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 8.7e-24 116.7 133 44.4
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 7.4e-23 113.6 114 45.6
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.7e-22 111.3 296 36.1
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 3.8e-19 101.3 84 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.5e-19 100.5 130 40.8
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.9e-18 99.0 87 59.8
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.5e-18 98.6 84 50.0
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-18 97.4 84 50.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 5.5e-18 97.4 84 50.0
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 2.1e-17 95.5 704 19.6
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 6.1e-17 94.0 87 58.6
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.9e-17 93.6 181 37.0
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 1.4e-16 92.8 293 27.6
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-15 89.4 87 46.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 4.8e-14 84.3 74 50.0
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.1e-13 83.2 60 63.3
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-13 83.2 74 48.6
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.7e-11 75.9 82 45.1
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-10 73.2 56 60.7
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.4e-10 72.8 75 46.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 2.5e-10 72.0 174 32.8
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.5e-10 70.9 66 45.5
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.7e-09 67.8 281 29.9
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 4.7e-09 67.8 262 27.9
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 7.4e-07 60.5 54 46.3


User provided reference genes

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