Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.8e-268 928.7 471 100.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.1e-261 905.2 476 96.8
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.9e-260 901.0 476 96.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.0e-248 862.1 474 92.4
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.3e-247 859.4 477 92.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.5e-238 829.3 477 90.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 3.4e-203 711.8 476 77.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 5.8e-203 711.1 477 77.4
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 7.6e-203 710.7 469 76.8
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 3.8e-202 708.4 477 77.4
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.4e-201 706.4 474 75.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 7.8e-200 700.7 473 76.1
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.9e-198 696.0 474 74.9
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.6e-197 693.0 480 76.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.1e-196 690.3 472 74.2
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.4e-196 689.9 476 75.2
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.4e-196 689.1 375 91.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.8e-195 684.5 472 74.8
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.2e-194 682.6 465 74.6
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.9e-194 682.2 416 82.0
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 6.4e-194 681.0 474 75.1
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-193 679.9 469 73.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 7.1e-193 677.6 462 75.8
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 9.3e-193 677.2 469 75.5
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.2e-192 676.8 445 77.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.1e-192 676.0 468 75.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 2.7e-192 675.6 469 75.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.5e-192 675.2 425 81.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.5e-192 675.2 387 85.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.0e-192 674.5 404 82.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-191 673.7 394 85.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.3e-191 673.3 393 85.8
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.7e-191 672.9 464 75.4
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.7e-191 672.9 471 74.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.3e-191 672.5 404 82.9
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 3.0e-191 672.2 404 82.7
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-191 672.2 461 75.1
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 5.1e-191 671.4 469 74.6
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 6.6e-191 671.0 472 73.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.7e-191 670.6 431 78.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 8.7e-191 670.6 413 82.1
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-190 670.2 468 73.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-190 669.8 464 75.4
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.5e-190 669.1 464 75.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.3e-190 668.7 395 85.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 5.6e-190 667.9 404 82.2
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 7.3e-190 667.5 382 86.1
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.3e-189 666.8 429 78.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-189 666.4 431 77.7
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 2.8e-189 665.6 393 84.5
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.6e-189 665.2 469 74.2
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.6e-189 665.2 463 74.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.8e-189 664.8 393 84.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.2e-189 664.5 462 74.2
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 6.2e-189 664.5 470 74.0
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 6.2e-189 664.5 404 83.2
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 6.2e-189 664.5 468 74.8
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 6.2e-189 664.5 404 82.9
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 8.1e-189 664.1 469 73.6
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 8.1e-189 664.1 395 83.5
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 8.1e-189 664.1 396 82.6
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.1e-188 663.7 387 85.5
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.4e-188 663.3 434 78.1
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.4e-188 663.3 461 74.6
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.4e-188 663.3 446 75.1
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.8e-188 662.9 445 78.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.8e-188 662.9 469 73.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 3.1e-188 662.1 446 75.3
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.0e-188 661.8 469 73.6
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 9.0e-188 660.6 461 75.1
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.2e-187 660.2 413 80.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 2.0e-187 659.4 465 73.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.6e-187 659.1 465 72.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 4.5e-187 658.3 442 76.7
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 5.8e-187 657.9 461 73.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 5.8e-187 657.9 384 84.9
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 9.9e-187 657.1 433 77.4
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.3e-186 656.8 383 85.1
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.7e-186 656.4 385 84.2
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 3.8e-186 655.2 402 82.1
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 4.9e-186 654.8 471 72.2
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 6.4e-186 654.4 414 78.7
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 6.4e-186 654.4 535 65.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.2e-185 652.1 453 74.6
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 5.4e-185 651.4 406 79.8
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 5.4e-185 651.4 414 77.8
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 5.4e-185 651.4 392 81.9
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 7.1e-185 651.0 406 79.3
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 7.1e-185 651.0 445 74.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.2e-184 650.2 394 81.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.7e-184 649.0 414 77.3
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.5e-184 648.7 385 82.6
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.9e-184 647.5 414 77.1
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.3e-183 646.7 394 81.0
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.8e-183 646.4 414 77.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.5e-182 642.5 399 80.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 5.6e-182 641.3 466 72.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 6.2e-181 637.9 382 82.5
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 8.1e-181 637.5 411 78.8
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.1e-180 637.1 377 82.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.0e-179 632.9 411 76.2
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 9.3e-177 624.0 477 69.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.5e-174 615.9 406 73.6
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.1e-173 612.8 480 66.0
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 7.1e-169 597.8 421 73.4
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.9e-166 589.7 416 70.0
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.4e-163 578.9 462 68.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.7e-155 551.2 357 73.7
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.6e-152 542.3 417 65.0
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.7e-151 538.1 469 63.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.6e-150 536.2 465 64.5
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.3e-148 528.5 383 67.6
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-146 524.2 345 78.8
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.4e-143 513.8 376 68.6
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.5e-142 510.4 342 79.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.0e-139 500.0 395 67.1
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.2e-137 492.3 372 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.3e-133 480.7 350 66.3
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.1e-132 477.6 361 65.7
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.6e-131 473.8 274 85.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 2.0e-131 473.4 366 64.5
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 8.8e-127 458.0 472 55.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 5.4e-124 448.7 276 79.7
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.3e-121 439.5 289 73.0
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 3.0e-119 433.0 258 82.2
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.9e-114 416.4 258 81.4
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 4.7e-112 409.1 288 72.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.0e-111 407.9 309 68.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 3.3e-105 386.3 346 61.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 5.6e-97 359.0 334 60.5
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 2.1e-96 357.1 212 84.4
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 6.2e-96 355.5 356 51.4
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.4e-94 349.7 329 52.9
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.1e-91 340.5 234 76.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 4.7e-88 329.3 228 75.9
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 5.2e-87 325.9 213 74.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 6.4e-77 292.4 211 71.1
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.2e-76 290.0 178 82.6
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 3.0e-66 256.9 216 63.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 9.0e-63 245.4 176 69.3
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.9e-61 240.4 357 40.3
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.8e-61 240.0 124 88.7
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.2e-59 235.0 137 84.7
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 1.8e-58 231.1 291 45.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.4e-47 194.1 159 65.4
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 3.9e-42 176.8 171 57.3
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 3.8e-37 160.2 112 75.9
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-36 158.3 85 88.2
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 3.6e-35 153.7 113 71.7
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 5.1e-34 149.8 124 67.7
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 2.7e-27 127.5 77 85.7
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 3.7e-24 117.1 84 71.4
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.2e-21 107.8 117 55.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 8.0e-19 99.4 90 56.7
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.4e-18 98.6 62 85.5
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 2.3e-18 97.8 62 83.9
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 4.8e-16 90.1 68 66.2
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 7.0e-15 86.3 50 80.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.2e-14 85.5 58 62.1
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 4.9e-08 63.5 44 70.5
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 8.3e-08 62.8 220 25.9


User provided reference genes

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