Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.3e-168 596.3 287 100.0
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 3.4e-145 518.5 282 89.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.1e-143 511.9 284 86.6
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.0e-138 495.0 284 84.5
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 5.2e-130 468.0 275 81.8
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 3.7e-128 461.8 227 98.2
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.1e-119 431.8 281 71.9
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 6.8e-114 414.5 284 67.3
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.0e-113 412.9 279 69.2
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.6e-113 412.5 282 67.0
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 8.3e-112 407.5 281 67.3
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 7.1e-111 404.4 281 67.6
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 3.3e-108 395.6 281 66.5
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.6e-107 393.3 277 65.0
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 6.2e-107 391.3 277 66.4
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 4.4e-105 385.2 277 65.3
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 2.2e-104 382.9 277 65.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.2e-104 382.9 285 64.2
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 6.4e-104 381.3 279 64.2
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.9e-103 379.8 277 64.6
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 2.4e-103 379.4 277 65.0
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 3.2e-103 379.0 279 62.7
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 9.2e-103 377.5 299 60.9
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 3.5e-102 375.6 279 63.4
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 4.6e-102 375.2 277 62.1
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 7.8e-102 374.4 277 62.5
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.0e-101 374.0 277 62.8
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 2.3e-101 372.9 275 61.8
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 3.0e-101 372.5 279 62.7
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 6.6e-101 371.3 278 63.3
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 4.3e-100 368.6 279 62.7
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 4.3e-100 368.6 277 62.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 5.6e-100 368.2 277 60.3
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 9.6e-100 367.5 277 62.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.2e-99 367.1 277 61.4
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.1e-99 366.3 277 62.8
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 6.2e-99 364.8 279 61.6
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 6.2e-99 364.8 277 61.4
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.4e-98 363.6 277 62.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.4e-98 362.8 277 62.5
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.4e-98 362.8 280 60.0
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 3.1e-98 362.5 280 60.0
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 6.9e-98 361.3 277 62.8
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 2.6e-97 359.4 280 59.6
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 9.9e-97 357.5 280 59.6
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 5.4e-95 351.7 277 59.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 7.1e-95 351.3 276 59.4
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.7e-94 349.4 280 60.4
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.7e-93 346.7 280 60.4
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.5e-92 343.6 277 58.1
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 4.8e-91 338.6 288 58.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-90 336.3 279 57.0
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-90 336.3 279 57.0
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-90 336.3 279 57.0
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 5.3e-90 335.1 290 57.6
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.6e-89 332.8 280 56.8
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 7.6e-89 331.3 279 56.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 9.9e-89 330.9 237 65.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.2e-88 329.7 285 55.4
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.2e-88 329.7 305 53.1
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 2.9e-88 329.3 228 68.4
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 4.9e-88 328.6 280 56.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 3.3e-84 315.8 231 64.5
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.3e-83 313.9 277 55.2
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 2.1e-83 313.2 235 61.7
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 2.1e-83 313.2 284 53.2
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.8e-83 312.8 283 53.4
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 6.4e-80 301.6 316 48.1
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.5e-79 299.7 277 53.4
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 1.2e-78 297.4 276 51.4
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.1e-78 296.6 295 49.8
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 9.6e-76 287.7 271 49.8
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.3e-72 277.3 271 48.3
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 2.5e-71 273.1 240 52.5
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 4.6e-70 268.9 277 49.5
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.9e-68 263.5 330 43.0
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 9.7e-68 261.2 183 69.4
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.1e-66 257.7 195 62.1
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.0e-64 251.1 191 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.6e-62 242.7 288 43.1
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.0e-60 236.9 175 62.9
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 3.3e-60 236.1 188 60.1
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 5.7e-60 235.3 171 65.5
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.8e-59 233.0 188 58.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 4.5e-57 225.7 286 41.3
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 8.8e-53 211.5 279 41.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.1e-47 194.5 276 38.8
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 3.2e-47 193.0 259 40.9
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.0e-45 188.0 146 58.9
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.3e-44 183.0 134 61.2
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.3e-43 181.0 92 94.6
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.4e-42 176.8 285 34.7
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.4e-37 161.0 137 59.1
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 6.8e-37 158.7 110 63.6
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.5e-36 157.5 156 54.5
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 3.1e-34 149.8 318 32.1
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 7.5e-28 128.6 100 64.0
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 5.2e-21 105.9 147 37.4
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 5.4e-18 95.9 175 32.0
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 2.8e-14 83.6 83 49.4
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.3e-11 74.7 82 45.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.9e-11 73.6 248 28.2
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.9e-11 73.6 249 26.9
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 8.3e-11 72.0 272 27.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.3e-11 72.0 247 25.9
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.1e-10 71.6 263 26.6
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.4e-10 70.5 252 27.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.2e-10 70.1 269 27.1
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 4.1e-10 69.7 240 27.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 5.4e-10 69.3 226 26.5
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 5.4e-10 69.3 240 28.3
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.0e-10 68.9 197 28.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 7.0e-10 68.9 256 28.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 7.0e-10 68.9 250 25.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-09 68.2 278 24.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.2e-09 68.2 200 26.5
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.6e-09 67.8 229 26.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.0e-09 67.4 248 23.4
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 6.0e-09 65.9 246 24.8
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 7.8e-09 65.5 253 27.3
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.0e-08 65.1 247 26.7
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.7e-08 64.3 229 25.8
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 1.7e-08 64.3 274 26.3
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.7e-08 64.3 243 26.7
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.3e-08 63.9 209 24.9
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.3e-08 63.9 221 28.5
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.3e-08 63.9 241 24.1
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 3.9e-08 63.2 176 30.1
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.0e-08 62.8 243 25.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 5.0e-08 62.8 254 27.6
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 8.6e-08 62.0 250 26.4
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 8.6e-08 62.0 252 25.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 8.6e-08 62.0 252 24.2
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.1e-07 61.6 179 28.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.1e-07 61.6 247 27.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.1e-07 61.6 253 26.1
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.1e-07 61.6 212 27.8
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.5e-07 61.2 39 66.7
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.5e-07 61.2 44 56.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.5e-07 61.2 208 26.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.5e-07 61.2 168 29.2
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.9e-07 60.8 201 26.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.9e-07 60.8 212 25.5
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.5e-07 60.5 250 26.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 3.3e-07 60.1 209 26.8
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 3.3e-07 60.1 49 55.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 4.3e-07 59.7 178 27.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.3e-07 59.7 183 29.0
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.3e-07 59.7 223 26.9
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 7.3e-07 58.9 205 26.3
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 9.5e-07 58.5 247 25.9
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.2e-06 58.2 244 24.2
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.2e-06 58.2 208 24.5
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.1e-06 57.4 247 24.7
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.8e-06 57.0 249 25.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.6e-06 56.6 171 28.1
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.7e-06 56.2 171 28.1
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.2e-06 55.8 170 28.2
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.2e-06 55.8 171 27.5
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.2e-06 55.8 188 25.0
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.2e-06 55.8 219 27.4
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 6.2e-06 55.8 217 26.3
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.0e-06 55.5 250 24.4


User provided reference genes

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