Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 2.7e-101 372.5 258 100.0
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.3e-100 370.2 196 99.5
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 5.2e-97 358.2 196 96.9
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.7e-92 343.2 197 92.9
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 3.6e-90 335.5 184 91.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 2.7e-85 319.3 195 87.2
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.5e-72 276.9 196 74.5
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.5e-69 265.8 182 74.2
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 6.0e-69 265.0 196 68.9
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.3e-68 263.8 196 73.0
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 2.3e-68 263.1 178 75.8
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 5.1e-68 261.9 195 73.3
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 6.6e-68 261.5 194 69.6
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 6.6e-68 261.5 183 72.7
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 1.5e-67 260.4 179 75.4
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.5e-67 260.4 174 74.7
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 1.5e-67 260.4 183 72.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 9.6e-67 257.7 168 77.4
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.6e-66 256.9 176 73.9
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.6e-66 256.9 174 74.1
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.1e-66 256.5 183 71.0
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 2.1e-66 256.5 174 73.6
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 2.8e-66 256.1 194 67.5
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 4.8e-66 255.4 183 71.0
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 6.2e-66 255.0 183 71.6
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 6.2e-66 255.0 174 74.1
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.1e-65 254.2 183 69.9
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.1e-65 254.2 183 69.9
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.1e-65 254.2 153 90.8
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.4e-65 253.8 196 69.4
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.4e-65 253.1 144 84.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.4e-65 253.1 144 83.3
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 3.1e-65 252.7 179 72.6
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 4.0e-65 252.3 176 71.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 5.3e-65 251.9 182 73.1
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 9.0e-65 251.1 180 73.3
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 9.0e-65 251.1 180 73.3
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.2e-64 250.8 176 72.2
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 1.2e-64 250.8 185 71.9
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.5e-64 250.4 197 71.6
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.0e-64 250.0 184 69.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 2.0e-64 250.0 185 71.4
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 3.4e-64 249.2 178 72.5
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 4.5e-64 248.8 183 69.4
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 4.5e-64 248.8 183 71.6
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 7.6e-64 248.1 183 69.9
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 7.6e-64 248.1 179 73.7
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 9.9e-64 247.7 193 69.4
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 9.9e-64 247.7 183 72.1
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.3e-63 247.3 145 83.4
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.7e-63 246.9 182 73.6
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.7e-63 246.9 185 69.7
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 4.9e-63 245.4 182 73.1
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 2.4e-62 243.0 192 65.6
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.2e-62 242.7 187 69.5
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 4.2e-62 242.3 144 79.9
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 5.5e-62 241.9 191 68.1
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 7.1e-62 241.5 179 67.0
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 3.5e-61 239.2 134 85.8
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 1.3e-60 237.3 159 73.0
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.8e-60 236.9 186 69.4
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 6.7e-60 235.0 196 66.3
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.5e-59 233.8 178 68.5
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 9.6e-59 231.1 185 63.8
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 9.6e-59 231.1 144 79.2
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.6e-58 230.3 185 63.2
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.6e-58 230.3 144 78.5
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 3.7e-58 229.2 183 62.8
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 3.7e-58 229.2 183 62.8
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 4.8e-58 228.8 161 72.7
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 6.2e-58 228.4 183 62.3
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 6.2e-58 228.4 183 62.3
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 6.2e-58 228.4 165 70.3
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.1e-57 227.6 144 78.5
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.8e-57 226.9 192 60.9
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.8e-57 226.9 183 62.8
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.4e-57 226.5 185 65.4
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 3.1e-57 226.1 132 82.6
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 9.0e-57 224.6 185 61.6
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 9.0e-57 224.6 167 68.9
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.0e-57 224.6 130 83.8
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 1.2e-56 224.2 178 66.9
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 1.2e-56 224.2 183 62.3
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.4e-56 222.6 128 82.0
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 4.5e-56 222.2 145 77.2
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.0e-55 221.1 245 51.8
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.7e-55 220.3 134 78.4
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 1.7e-55 220.3 196 63.3
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.7e-55 220.3 155 72.3
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 9.6e-51 204.5 202 53.5
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.6e-45 187.2 183 58.5
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 7.4e-43 178.3 132 68.2
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.2e-42 176.8 136 61.0
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 8.2e-42 174.9 91 91.2
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 8.2e-42 174.9 179 52.5
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 9.0e-41 171.4 186 51.6
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 7.2e-38 161.8 139 64.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 9.4e-38 161.4 130 66.9
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 4.1e-33 146.0 189 46.0
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.6e-32 143.3 182 48.4
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 6.1e-29 132.1 131 55.7
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 6.1e-29 132.1 132 62.9
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 6.1e-29 132.1 132 62.9
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 8.8e-28 128.3 147 49.0
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 7.5e-19 98.6 65 78.5
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.7e-18 97.4 107 57.9
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.8e-17 94.0 117 53.0
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 1.6e-16 90.9 104 51.9
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 3.5e-16 89.7 106 43.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 3.2e-14 83.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 3.1e-09 66.6 59 55.9
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 3.1e-09 66.6 37 86.5
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 1.6e-08 64.3 31 80.6
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.3e-07 61.2 31 77.4
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.2e-06 56.2 118 40.7


User provided reference genes

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