Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 1.1e-25 119.8 87 100.0
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 2.0e-24 115.5 87 97.7
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.3e-20 102.1 87 69.0
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 1.1e-19 99.8 57 93.0
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 1.1e-17 93.2 58 86.2
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 1.2e-16 89.7 57 80.7
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.0e-16 89.0 90 77.8
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.0e-16 89.0 90 76.7
Nitab4.5_0015562g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.7e-15 85.9 52 84.6
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 2.2e-15 85.5 87 79.3
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 8.4e-15 83.6 87 79.3
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 3.2e-14 81.6 87 67.8
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 5.4e-14 80.9 57 75.4
CAN.G1417.6 Capsicum annuum HOM05D007506 ORTHO05D008409 1.6e-13 79.3 52 84.6
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 6.0e-13 77.4 87 78.2
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 1.0e-12 76.6 87 74.7
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 6.6e-12 73.9 86 73.3
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 6.6e-12 73.9 86 73.3
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 6.6e-12 73.9 80 66.2
PGSC0003DMG400023393 Solanum tuberosum HOM05D007506 ORTHO05D008409 6.6e-12 73.9 60 75.0
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 8.7e-12 73.6 58 69.0
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.1e-11 73.2 58 72.4
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 3.3e-11 71.6 56 71.4
Solyc05g055250.2 Solanum lycopersicum HOM05D007506 ORTHO05D008409 1.6e-10 69.3 60 70.0
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 2.1e-10 68.9 60 71.7
Dinv02209 Davidia involucrata HOM05D007506 ORTHO05D008409 6.2e-10 67.4 50 72.0
Dinv07589 Davidia involucrata HOM05D007506 ORTHO05D008409 6.2e-10 67.4 50 72.0
Sopen05g033690 Solanum pennellii HOM05D007506 ORTHO05D008409 1.8e-09 65.9 58 69.0
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 2.4e-09 65.5 42 83.3
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 5.3e-09 64.3 53 73.6
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 6.9e-09 63.9 90 64.4
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 9.0e-09 63.5 57 64.9
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 9.0e-09 63.5 57 64.9
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 4.4e-08 61.2 89 61.8
vmacro10310 Vaccinium macrocarpon HOM05D007506 ORTHO05D008409 5.8e-08 60.8 56 67.9
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 7.6e-08 60.5 57 63.2
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 9.9e-08 60.1 57 64.9
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 1.3e-07 59.7 57 56.1
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.7e-07 59.3 55 65.5
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 2.9e-07 58.5 56 60.7
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 3.8e-07 58.2 57 63.2
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 4.9e-07 57.8 57 57.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 6.4e-07 57.4 56 58.9
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 6.4e-07 57.4 57 57.9
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 8.4e-07 57.0 56 53.6
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 8.4e-07 57.0 56 53.6
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 8.4e-07 57.0 56 53.6
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 8.4e-07 57.0 56 53.6
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 1.1e-06 56.6 90 52.2
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 1.1e-06 56.6 56 57.1
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.4e-06 56.2 57 56.1
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 1.4e-06 56.2 57 61.4
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.4e-06 56.2 58 60.3
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 1.4e-06 56.2 57 57.9
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 1.9e-06 55.8 62 61.3
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 1.9e-06 55.8 60 60.0
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.9e-06 55.8 60 60.0
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.9e-06 55.8 57 57.9
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.9e-06 55.8 57 56.1
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 2.4e-06 55.5 59 57.6
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 2.4e-06 55.5 48 60.4
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 3.2e-06 55.1 59 61.0
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 3.2e-06 55.1 59 59.3
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.2e-06 55.1 64 51.6
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 4.2e-06 54.7 58 63.8
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 4.2e-06 54.7 58 58.6
Nn6g34869 Nelumbo nucifera HOM05D007506 ORTHO05D008409 4.2e-06 54.7 57 61.4
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 4.2e-06 54.7 55 60.0
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 4.2e-06 54.7 33 81.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 7.1e-06 53.9 57 56.1
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 9.3e-06 53.5 50 64.0
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 9.3e-06 53.5 57 54.4
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 9.3e-06 53.5 61 60.7


User provided reference genes

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