Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 3.9e-259 897.5 425 100.0
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.1e-248 862.8 422 97.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 6.3e-241 837.0 422 93.8
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 6.1e-220 767.3 370 97.8
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 3.2e-216 755.0 356 100.0
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 9.2e-208 726.9 401 85.0
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 5.6e-205 717.6 401 84.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.6e-204 716.1 393 85.0
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 8.9e-203 710.3 400 84.0
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 8.4e-193 677.2 422 73.7
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.2e-192 675.2 412 75.7
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 7.6e-186 654.1 406 72.9
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 4.6e-183 644.8 400 74.0
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 5.1e-182 641.3 403 72.5
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 5.1e-182 641.3 403 72.2
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 5.1e-182 641.3 400 71.5
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.5e-181 639.0 412 70.6
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 3.3e-181 638.6 414 71.0
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 5.6e-181 637.9 405 71.1
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 5.6e-181 637.9 414 71.0
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 7.3e-181 637.5 405 70.9
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.6e-181 637.1 425 70.4
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.6e-180 635.2 425 70.1
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.2e-180 634.4 425 70.4
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.8e-179 632.9 404 71.8
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 2.4e-179 632.5 406 71.9
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.3e-179 631.3 409 71.9
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.9e-179 630.9 409 72.1
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 6.9e-179 630.9 401 72.6
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 6.9e-179 630.9 399 73.2
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.4e-178 628.6 409 71.9
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.4e-178 628.6 409 71.9
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.5e-178 628.2 409 71.4
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.5e-178 628.2 409 71.9
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.5e-178 628.2 409 71.9
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 4.5e-178 628.2 400 71.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.9e-178 627.1 406 72.2
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.3e-177 626.7 406 70.2
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 1.7e-177 626.3 398 70.9
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 2.9e-177 625.5 398 71.1
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-177 625.5 409 71.6
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.9e-177 625.5 414 68.6
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 4.9e-177 624.8 403 71.5
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.4e-177 624.4 409 71.6
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.9e-176 622.9 416 69.2
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 3.2e-176 622.1 418 68.7
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 7.1e-176 620.9 399 72.9
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.2e-175 620.2 410 69.5
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.1e-175 619.4 404 70.8
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 4.6e-175 618.2 395 70.4
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 7.9e-175 617.5 408 70.1
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.0e-174 617.1 415 65.8
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 8.7e-174 614.0 399 69.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.5e-173 613.2 399 70.9
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.3e-173 612.1 398 70.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 5.6e-173 611.3 403 68.5
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.4e-171 606.7 388 71.9
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.4e-171 606.7 413 67.3
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 6.9e-171 604.4 416 67.1
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.5e-170 603.2 411 66.2
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 2.0e-170 602.8 413 67.3
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 4.5e-170 601.7 401 69.8
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 7.6e-170 600.9 401 68.8
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 1.3e-169 600.1 414 67.1
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.7e-169 599.7 412 67.5
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 1.7e-169 599.7 360 75.3
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 2.2e-169 599.4 409 67.2
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 4.9e-169 598.2 402 68.9
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.1e-168 597.0 403 69.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.9e-168 596.3 395 69.1
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 4.2e-168 595.1 404 68.3
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 5.5e-168 594.7 397 68.5
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 2.1e-167 592.8 399 69.2
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 6.0e-167 591.3 408 67.2
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 6.7e-166 587.8 414 64.7
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 8.7e-166 587.4 409 66.0
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.9e-165 586.3 399 68.4
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 4.3e-165 585.1 403 67.7
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 2.1e-164 582.8 368 72.0
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 2.8e-164 582.4 372 70.2
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 5.8e-162 574.7 401 67.1
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 2.5e-160 569.3 405 64.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 3.2e-160 568.9 416 64.9
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.7e-153 546.6 351 71.5
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.2e-151 540.4 413 61.3
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.6e-151 538.9 398 62.6
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.6e-151 538.9 347 70.0
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 3.0e-150 535.8 395 64.8
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 2.5e-149 532.7 415 61.4
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 3.6e-143 512.3 409 59.2
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.1e-141 507.3 400 61.8
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.8e-129 465.7 399 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.2e-127 460.7 397 56.9
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.2e-125 454.1 287 73.5
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 6.3e-116 421.8 324 61.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 6.6e-113 411.8 352 57.7
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 2.1e-103 380.2 401 49.4
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.7e-92 344.0 293 55.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 4.6e-90 335.9 431 44.1
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.0e-89 334.7 207 73.9
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.6e-77 293.5 437 40.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 7.3e-72 275.4 465 38.7
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.3e-65 253.8 298 45.6
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-62 244.2 157 67.5
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-58 231.5 394 36.0
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 3.1e-38 163.7 123 59.3
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.6e-34 151.4 318 30.8
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 2.2e-31 141.0 297 33.3
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.0e-28 132.1 93 66.7
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.2e-26 125.2 311 31.5
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 2.1e-18 97.8 67 68.7
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 4.1e-14 83.6 59 62.7
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 3.0e-09 67.4 84 42.9


User provided reference genes

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