Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.6e-257 892.1 424 100.0
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 7.0e-216 753.8 356 100.0
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 2.8e-212 741.9 356 98.0
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 8.3e-209 730.3 351 97.7
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 7.8e-207 723.8 356 94.9
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.1e-188 662.5 361 85.0
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 4.0e-187 658.3 359 85.5
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 3.4e-186 655.2 357 85.2
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 6.6e-182 641.0 361 83.4
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.4e-170 602.1 358 77.4
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 9.9e-170 600.5 354 77.4
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 3.0e-166 589.0 358 74.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.5e-165 586.6 374 71.4
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 5.3e-163 578.2 358 74.0
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 3.4e-162 575.5 356 73.0
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 9.9e-162 573.9 356 71.9
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 1.3e-161 573.5 362 72.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.2e-161 572.8 358 71.8
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 4.9e-161 571.6 357 72.0
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.1e-160 570.5 362 71.5
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.4e-160 569.3 358 71.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 2.4e-160 569.3 359 72.4
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 4.2e-160 568.5 358 72.3
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 7.1e-160 567.8 358 73.5
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.2e-159 567.0 359 70.8
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.6e-159 566.6 358 70.9
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 2.1e-159 566.2 350 74.0
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 3.5e-159 565.5 359 71.9
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 4.6e-159 565.1 350 74.0
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 4.6e-159 565.1 355 71.0
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.8e-158 563.1 354 70.6
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 3.9e-158 562.0 351 72.9
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.1e-158 561.6 359 72.4
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.1e-158 561.6 359 72.4
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.7e-158 560.8 359 72.4
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 8.7e-158 560.8 350 72.9
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.5e-157 560.1 357 70.6
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-157 559.7 359 71.9
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-157 559.7 359 72.1
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.5e-157 559.3 359 72.1
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 2.5e-157 559.3 350 72.9
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 2.5e-157 559.3 358 70.7
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-157 558.9 359 72.1
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-157 558.9 359 72.1
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-157 558.9 359 72.1
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-157 558.9 359 72.1
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.3e-157 558.5 359 72.1
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 7.4e-157 557.8 350 73.1
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.3e-156 557.0 358 70.9
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.6e-156 556.6 360 71.1
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.1e-156 556.2 357 70.6
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.1e-156 556.2 359 69.9
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-156 555.8 359 71.9
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.8e-156 555.8 350 72.9
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.8e-156 555.1 359 71.9
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.8e-155 553.1 355 70.4
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 2.4e-155 552.7 357 70.3
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 9.0e-155 550.8 358 70.7
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 9.0e-155 550.8 361 66.8
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 4.5e-154 548.5 357 69.7
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 5.8e-154 548.1 356 69.1
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 7.6e-154 547.7 327 74.9
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 4.9e-153 545.0 360 68.1
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.1e-152 543.9 356 70.8
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-152 543.5 360 69.4
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 5.5e-152 541.6 362 68.0
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 9.3e-152 540.8 360 68.1
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.6e-151 540.0 359 68.2
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.6e-151 540.0 348 70.1
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 2.7e-151 539.3 359 67.7
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 4.6e-151 538.5 357 67.2
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.8e-150 536.6 357 69.5
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 3.0e-150 535.8 358 68.4
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 3.9e-150 535.4 359 68.0
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 6.7e-150 534.6 350 70.0
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 5.7e-149 531.6 360 67.8
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 1.6e-148 530.0 355 69.6
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 3.7e-148 528.9 332 72.9
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 5.3e-147 525.0 360 66.9
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.5e-146 523.5 361 67.0
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.5e-146 521.9 361 65.1
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 7.6e-146 521.2 361 65.7
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.7e-145 520.0 333 70.6
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.8e-142 510.0 362 64.6
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 4.8e-140 501.9 357 64.1
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 4.8e-140 501.9 357 66.1
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 5.5e-136 488.4 353 65.2
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 2.1e-135 486.5 357 63.3
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 6.3e-132 474.9 358 62.6
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 4.2e-128 462.2 360 59.7
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.3e-124 450.7 359 60.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 4.5e-122 442.2 356 58.1
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 8.5e-121 438.0 273 74.7
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.6e-119 433.7 350 58.9
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 8.2e-116 421.4 324 61.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.7e-105 387.1 327 57.5
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 5.4e-91 339.0 278 56.8
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.3e-89 334.3 278 57.6
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.7e-84 316.2 193 74.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 2.3e-81 307.0 383 44.6
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 3.8e-68 263.1 345 42.0
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.3e-65 253.8 298 45.6
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.2e-63 248.1 415 38.1
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-62 244.2 157 67.5
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.8e-45 186.0 113 73.5
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.3e-33 147.5 330 31.8
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 4.1e-30 136.7 285 34.0
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 5.3e-30 136.3 97 58.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-26 125.2 83 69.9
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 2.3e-25 120.9 296 32.1
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 5.3e-14 83.2 54 70.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 1.0e-12 79.0 54 64.8


User provided reference genes

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