Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 5.6e-302 1040.0 487 100.0
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 9.2e-220 766.9 370 97.8
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 3.3e-217 758.4 370 96.8
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 3.2e-212 741.9 370 94.6
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 9.5e-209 730.3 351 97.7
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 2.1e-195 686.0 375 85.6
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 6.6e-194 681.0 370 85.9
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 1.5e-190 669.8 371 85.2
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.9e-188 662.9 370 84.9
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 7.6e-174 614.4 368 76.6
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 6.5e-173 611.3 368 76.1
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 7.4e-169 597.8 370 73.8
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.1e-167 592.4 369 72.4
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.1e-164 583.9 374 71.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.4e-164 583.6 369 71.8
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.4e-164 583.6 365 71.0
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 3.2e-164 582.4 367 71.1
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 3.2e-164 582.4 369 72.9
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 5.5e-164 581.6 375 71.7
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 7.2e-164 581.3 368 72.0
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 1.6e-163 580.1 366 72.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 2.1e-163 579.7 368 71.2
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.7e-163 579.3 368 70.9
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 7.9e-163 577.8 368 71.7
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.3e-162 577.0 383 68.4
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 2.3e-162 576.2 368 72.8
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 6.7e-162 574.7 366 71.3
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 6.7e-162 574.7 371 70.4
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.1e-161 573.9 368 70.1
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 1.1e-161 573.9 366 70.2
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.9e-161 573.2 368 70.7
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 3.3e-161 572.4 372 70.4
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 7.4e-161 571.2 364 71.2
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 7.4e-161 571.2 368 69.6
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 7.4e-161 571.2 364 69.8
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 3.7e-160 568.9 364 71.7
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 8.2e-160 567.8 368 70.4
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.1e-159 567.4 372 70.4
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.8e-159 566.6 368 69.8
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 4.1e-159 565.5 365 70.4
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.9e-159 564.7 372 70.2
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 6.9e-159 564.7 373 69.2
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 6.9e-159 564.7 364 71.4
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 9.1e-159 564.3 367 70.0
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.6e-158 562.8 372 69.9
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.4e-158 562.4 372 69.9
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.5e-158 562.0 372 70.2
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.9e-158 561.6 372 70.2
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.7e-158 561.2 372 70.2
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.7e-158 561.2 372 70.2
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.7e-158 561.2 372 70.2
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 7.7e-158 561.2 368 68.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-157 560.8 369 70.5
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.0e-157 560.8 370 66.8
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.2e-157 559.7 372 69.9
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-157 559.3 372 69.4
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.0e-157 558.5 372 69.9
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-156 557.4 372 69.9
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.9e-156 556.6 378 68.5
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 5.5e-156 555.1 366 69.1
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 1.6e-155 553.5 366 68.0
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.6e-155 553.5 365 69.9
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 4.6e-155 552.0 362 68.8
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.8e-154 550.1 376 66.5
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 3.0e-154 549.3 365 68.5
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 8.8e-154 547.7 365 67.9
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.5e-153 547.0 364 69.2
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 2.0e-153 546.6 376 66.5
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 2.6e-153 546.2 365 68.2
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 4.4e-153 545.4 374 68.2
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 5.7e-153 545.0 365 68.5
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 5.7e-153 545.0 368 69.0
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 5.7e-153 545.0 362 70.2
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 7.4e-153 544.7 365 68.5
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 9.7e-153 544.3 374 65.5
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.2e-152 543.1 323 75.5
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 4.8e-152 542.0 351 71.2
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.1e-151 540.8 364 68.1
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 6.9e-151 538.1 365 67.7
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 2.0e-150 536.6 373 67.0
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 7.7e-150 534.6 347 70.0
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.0e-149 534.3 366 66.4
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 3.8e-149 532.3 370 65.1
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 4.1e-143 512.3 370 65.4
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 2.6e-142 509.6 366 63.7
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 1.3e-141 507.3 368 63.0
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 3.0e-138 496.1 375 62.1
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 5.7e-137 491.9 376 62.0
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 4.8e-136 488.8 356 64.9
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.4e-130 470.7 375 58.9
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 2.4e-127 459.9 364 61.3
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 2.2e-125 453.4 370 57.6
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 6.5e-125 451.8 287 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 5.7e-121 438.7 363 58.1
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 5.2e-114 415.6 324 60.8
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 2.2e-104 383.6 333 56.8
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 5.6e-92 342.4 371 48.2
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.6e-91 340.9 293 55.6
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.9e-88 330.1 207 73.4
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 3.3e-84 316.6 397 44.6
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 6.4e-72 275.8 351 43.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 7.6e-65 252.3 434 37.6
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.6e-62 244.6 294 44.9
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 2.1e-62 244.2 157 67.5
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 2.9e-48 197.2 126 70.6
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.1e-34 152.1 319 31.3
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 5.0e-32 143.3 297 33.7
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 8.0e-30 136.0 97 57.7
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.7e-28 129.8 93 65.6
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 9.1e-26 122.5 307 31.6
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 1.2e-17 95.5 67 67.2
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 5.2e-13 80.1 59 59.3


User provided reference genes

Program Settings