Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 3.6e-252 874.4 426 100.0
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 5.9e-239 830.5 430 95.1
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 9.2e-216 753.4 428 83.6
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 6.0e-215 750.7 428 85.3
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 4.4e-210 734.6 424 83.3
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 2.4e-208 728.8 412 84.7
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.4e-195 685.6 412 78.4
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.2e-194 683.3 427 76.1
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.2e-194 683.3 426 77.0
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.3e-193 679.9 425 76.7
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 3.8e-193 678.3 414 76.6
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 4.9e-193 677.9 429 74.6
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.1e-192 676.8 432 76.2
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 1.0e-190 670.2 429 75.1
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.3e-190 669.8 428 75.0
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.7e-190 669.5 430 74.4
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.5e-189 666.4 429 74.6
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 4.3e-189 664.8 404 77.2
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 5.6e-189 664.5 429 73.9
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 7.3e-189 664.1 413 76.3
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.3e-188 663.3 415 75.4
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.1e-188 662.5 421 74.8
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 2.1e-188 662.5 431 74.0
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 3.6e-188 661.8 433 74.1
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.8e-188 661.4 434 72.1
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 4.8e-188 661.4 430 72.6
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.4e-187 659.8 438 72.1
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.4e-187 659.8 429 73.9
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.0e-187 658.3 434 72.1
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 4.0e-187 658.3 429 72.5
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 9.0e-187 657.1 422 72.3
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 9.0e-187 657.1 428 73.4
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.2e-186 656.8 434 71.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.5e-186 654.8 429 73.4
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 7.6e-186 654.1 432 75.2
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 9.9e-186 653.7 432 72.5
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 6.4e-185 651.0 412 73.8
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.4e-184 649.8 431 72.6
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.6e-183 646.4 417 73.6
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 2.1e-183 646.0 418 73.9
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 2.3e-182 642.5 429 72.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.0e-182 642.1 429 70.9
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.5e-181 639.8 429 73.0
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 4.3e-181 638.3 423 70.0
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 3.7e-180 635.2 434 70.5
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.1e-179 633.6 433 70.9
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 1.4e-179 633.3 418 71.8
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 5.3e-179 631.3 427 69.3
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 5.3e-179 631.3 418 72.0
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 2.6e-178 629.0 425 72.0
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 2.2e-177 625.9 439 70.6
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.9e-177 625.5 425 71.3
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.8e-177 625.2 445 69.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 4.9e-177 624.8 427 72.6
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.4e-177 624.4 425 71.1
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 6.4e-177 624.4 409 69.4
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 8.4e-177 624.0 425 71.3
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.9e-176 622.9 425 70.4
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 9.3e-176 620.5 427 70.7
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.6e-175 619.8 425 71.3
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-175 619.4 425 71.1
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 6.0e-175 617.8 424 68.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 7.9e-175 617.5 427 70.5
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.9e-175 617.5 434 67.5
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.0e-174 617.1 430 69.8
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-174 616.3 427 70.3
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 2.3e-174 615.9 427 70.5
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.0e-174 615.5 423 70.7
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.0e-174 615.5 423 70.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.9e-174 615.1 415 70.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.9e-174 615.1 427 68.1
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 3.9e-174 615.1 422 70.1
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 6.7e-174 614.4 430 69.1
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 6.7e-174 614.4 417 69.8
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.4e-173 610.9 419 68.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.1e-172 609.4 423 69.7
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.8e-172 609.0 415 70.8
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.8e-172 609.0 415 70.8
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.2e-172 607.4 419 68.3
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.8e-171 606.3 419 70.2
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 2.4e-171 605.9 411 70.3
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.4e-171 605.9 424 68.9
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.5e-170 603.2 430 68.4
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 2.0e-170 602.8 429 68.5
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 3.4e-170 602.1 454 66.3
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 7.6e-170 600.9 426 68.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.3e-169 600.1 414 68.8
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.3e-169 600.1 420 69.0
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.5e-169 597.8 428 67.3
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.5e-168 594.7 427 67.7
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.3e-166 590.1 416 68.3
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 3.9e-166 588.6 428 66.8
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 3.9e-166 588.6 428 66.8
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.3e-164 583.6 412 67.7
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.4e-163 580.1 424 64.6
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 6.9e-163 577.8 397 68.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 9.0e-163 577.4 411 66.9
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 5.9e-162 574.7 424 64.2
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 5.0e-161 571.6 424 64.9
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 3.2e-160 568.9 431 63.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.5e-160 568.2 431 64.3
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.0e-158 563.9 428 63.3
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.9e-157 559.7 429 65.5
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.4e-157 557.8 434 62.7
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-155 553.5 415 65.5
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.0e-150 537.3 423 61.2
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.3e-150 536.2 428 60.5
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.1e-149 533.9 435 60.5
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.6e-149 532.7 425 60.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 5.7e-149 531.6 434 58.5
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 7.4e-149 531.2 412 60.9
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.8e-148 529.3 423 61.5
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 3.7e-148 528.9 419 63.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 2.4e-147 526.2 355 71.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.3e-145 520.4 435 56.8
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.0e-143 511.1 448 56.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.2e-136 488.8 414 56.0
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.0e-134 482.3 394 57.9
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 4.1e-123 445.7 407 56.8
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 3.6e-119 432.6 309 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 6.8e-118 428.3 433 49.7
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.4e-115 419.9 295 65.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 3.8e-113 412.5 411 50.1
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.4e-110 404.1 428 51.6
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.1e-110 402.9 428 51.6
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.5e-109 400.6 422 46.4
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 2.4e-107 393.3 414 45.7
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.6e-106 390.6 276 66.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.8e-101 371.3 345 51.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 2.9e-92 343.2 410 43.2
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 2.7e-90 336.7 261 66.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 7.1e-83 312.0 227 67.0
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 6.6e-81 305.4 241 63.1
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.6e-81 305.4 290 51.4
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 3.5e-66 256.5 154 77.3
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.0e-61 240.7 113 98.2
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-53 214.9 160 64.4
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.6e-50 203.0 137 66.4
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-48 197.2 311 37.0
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.4e-46 191.4 130 66.2
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-44 182.6 145 64.1
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.1e-40 171.8 125 67.2
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.4e-38 164.9 159 56.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.3e-38 162.9 405 27.7
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.2e-35 153.7 213 46.0
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 2.8e-31 140.6 158 51.3
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-20 104.8 80 65.0
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-20 103.6 79 64.6
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.5e-20 102.4 79 64.6
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 9.4e-19 99.0 90 54.4
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 4.7e-18 96.7 92 54.3
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 4.7e-18 96.7 72 68.1
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-17 93.6 102 51.0
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 8.8e-17 92.4 62 71.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.2e-16 92.0 82 53.7
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-14 83.6 173 30.1
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 2.7e-13 80.9 74 55.4
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 8.5e-12 75.9 61 63.9
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.2e-10 72.0 58 62.1
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-09 68.2 55 65.5
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-09 67.8 58 62.1
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 3.0e-09 67.4 106 34.9
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.1e-06 57.4 72 34.7
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-06 57.0 50 56.0


User provided reference genes

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