Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002050 Solanum pennellii HOM05D007002 ORTHO05D008602 1.9e-127 459.1 226 100.0
Solyc11g006130.2 Solanum lycopersicum HOM05D007002 ORTHO05D008602 1.2e-116 423.3 214 95.3
Nitab4.5_0000856g0230 Nicotiana tabacum HOM05D007002 ORTHO05D008602 5.8e-92 341.3 214 79.0
CAN.G1256.10 Capsicum annuum HOM05D007002 ORTHO05D008602 1.7e-91 339.7 221 80.1
Nitab4.5_0004928g0070 Nicotiana tabacum HOM05D007002 ORTHO05D008602 1.7e-88 329.7 220 78.6
Peaxi162Scf00120g00412 Petunia axillaris HOM05D007002 ORTHO05D008602 9.6e-79 297.4 217 68.7
CSS0007351 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 1.4e-61 240.4 214 56.5
Hma1.2p1_0345F.1_g131170 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 2.2e-59 233.0 209 56.0
Ciclev10021195m.g Citrus clementina HOM05D007002 ORTHO05D008602 6.5e-59 231.5 212 54.2
QL03p032095 Quercus lobata HOM05D007002 ORTHO05D008602 3.2e-58 229.2 213 53.1
Sabra13G0040800 Salix brachista HOM05D007002 ORTHO05D008602 3.2e-58 229.2 219 53.9
Rhsim05G0175600 Rhododendron simsii HOM05D007002 ORTHO05D008602 9.3e-58 227.6 221 53.4
Cc02_g09060 Coffea canephora HOM05D007002 ORTHO05D008602 1.6e-57 226.9 213 54.9
Aqoxy2G03608 Aquilegia oxysepala HOM05D007002 ORTHO05D008602 4.6e-57 225.3 219 52.1
CiPaw.07G077800 Carya illinoinensis HOM05D007002 ORTHO05D008602 6.0e-57 224.9 214 52.8
Atru.chr2.890 Acer truncatum HOM05D007002 ORTHO05D008602 7.9e-57 224.6 212 51.9
GSVIVG01036211001 Vitis vinifera HOM05D007002 ORTHO05D008602 5.1e-56 221.9 219 50.7
CSS0049123 Camellia sinensis var. sinensis HOM05D007002 ORTHO05D008602 6.7e-56 221.5 214 53.3
Potri.013G044300 Populus trichocarpa HOM05D007002 ORTHO05D008602 6.7e-56 221.5 209 54.5
CANSAT54G1467 Cannabis sativa HOM05D007002 ORTHO05D008602 1.9e-55 219.9 218 50.9
COL.COLO4_15422 Corchorus olitorius HOM05D007002 ORTHO05D008602 1.9e-55 219.9 212 52.8
Cfa006325 Carpinus fangiana HOM05D007002 ORTHO05D008602 2.5e-55 219.5 218 51.8
CDE05G3366 Ceratophyllum demersum HOM05D007002 ORTHO05D008602 3.3e-55 219.2 211 52.6
Migut.F01549 Erythranthe guttata HOM05D007002 ORTHO05D008602 4.3e-55 218.8 220 51.8
Haze_04463 Corylus avellana HOM05D007002 ORTHO05D008602 2.1e-54 216.5 216 50.9
TPR.G10263 Trifolium pratense HOM05D007002 ORTHO05D008602 2.1e-54 216.5 222 50.5
AUR62004881 Chenopodium quinoa HOM05D007002 ORTHO05D008602 3.7e-54 215.7 213 51.6
SalBow6G1555 Salvia bowleyana HOM05D007002 ORTHO05D008602 8.2e-54 214.5 219 51.6
AUR62001079 Chenopodium quinoa HOM05D007002 ORTHO05D008602 3.1e-53 212.6 213 51.2
Gorai.007G280200 Gossypium raimondii HOM05D007002 ORTHO05D008602 5.3e-53 211.8 220 49.5
CsaV3_2G003790 Cucumis sativus L. HOM05D007002 ORTHO05D008602 1.2e-52 210.7 220 50.0
FAN14G1984 Fragaria x ananassa HOM05D007002 ORTHO05D008602 2.0e-52 209.9 215 48.8
Hund06939 Selenicereus undatus HOM05D007002 ORTHO05D008602 2.6e-52 209.5 232 52.6
FAN02G3625 Fragaria x ananassa HOM05D007002 ORTHO05D008602 3.4e-52 209.1 214 49.1
Gohir.A11G251100 Gossypium hirsutum HOM05D007002 ORTHO05D008602 3.4e-52 209.1 220 49.5
Manes.09G149600 Manihot esculenta HOM05D007002 ORTHO05D008602 3.4e-52 209.1 214 52.3
FvH4_6g02330 Fragaria vesca HOM05D007002 ORTHO05D008602 4.5e-52 208.8 215 48.4
PSO017G2142 Papaver somniferum HOM05D007002 ORTHO05D008602 4.5e-52 208.8 211 51.7
Ah.04g163340 Amaranthus hybridus HOM05D007002 ORTHO05D008602 5.8e-52 208.4 220 49.1
Gohir.D11G261600 Gossypium hirsutum HOM05D007002 ORTHO05D008602 7.6e-52 208.0 223 48.9
TWI12G1360 Tripterygium wilfordii HOM05D007002 ORTHO05D008602 7.6e-52 208.0 213 52.6
Actinidia03304 Actinidia chinensis HOM05D007002 ORTHO05D008602 1.0e-51 207.6 260 45.0
PSO063G1627 Papaver somniferum HOM05D007002 ORTHO05D008602 1.0e-51 207.6 211 52.1
Duzib106G1322 Durio zibethinus HOM05D007002 ORTHO05D008602 1.7e-51 206.8 213 50.7
RcHm_v2.0_Chr3g0450091 Rosa chinensis HOM05D007002 ORTHO05D008602 2.2e-51 206.5 214 49.1
Sed0009113 Sechium edule HOM05D007002 ORTHO05D008602 2.2e-51 206.5 213 49.3
Lsat_1_v5_gn_2_107680 Lactuca sativa HOM05D007002 ORTHO05D008602 3.8e-51 205.7 238 49.6
FAN09G1583 Fragaria x ananassa HOM05D007002 ORTHO05D008602 6.5e-51 204.9 208 49.5
Oeu058336.2 Olea europaea HOM05D007002 ORTHO05D008602 6.5e-51 204.9 270 44.1
MSTRG.8094 Avicennia marina HOM05D007002 ORTHO05D008602 1.4e-50 203.8 214 50.5
ECA238G2830 Erigeron canadensis HOM05D007002 ORTHO05D008602 1.4e-50 203.8 211 48.8
HanXRQChr11g0322841 Helianthus annuus HOM05D007002 ORTHO05D008602 1.4e-50 203.8 209 50.7
MD04G1230000 Malus domestica HOM05D007002 ORTHO05D008602 2.5e-50 203.0 215 48.4
Thecc.05G276500 Theobroma cacao HOM05D007002 ORTHO05D008602 2.5e-50 203.0 213 49.8
ClCG02G016960 Citrullus lanatus HOM05D007002 ORTHO05D008602 3.2e-50 202.6 220 50.5
Eucgr.B02134 Eucalyptus grandis HOM05D007002 ORTHO05D008602 3.2e-50 202.6 215 50.2
Nn1g02689 Nelumbo nucifera HOM05D007002 ORTHO05D008602 5.5e-50 201.8 219 49.8
arahy.Tifrunner.gnm1.ann1.APY3E0 Arachis hypogaea HOM05D007002 ORTHO05D008602 7.2e-50 201.4 216 47.2
ATR0680G418 Amborella trichopoda HOM05D007002 ORTHO05D008602 2.7e-49 199.5 220 49.5
Sc20g0000540 Simmondsia chinensis HOM05D007002 ORTHO05D008602 3.5e-49 199.1 217 50.2
Glyma.10G167200 Glycine max HOM05D007002 ORTHO05D008602 4.6e-49 198.7 212 50.0
Psat6g142960 Pisum sativum HOM05D007002 ORTHO05D008602 7.9e-49 198.0 218 49.1
Aa31LG2G12120 Aethionema arabicum HOM05D007002 ORTHO05D008602 1.8e-48 196.8 214 48.1
arahy.Tifrunner.gnm1.ann1.DW51WY Arachis hypogaea HOM05D007002 ORTHO05D008602 2.3e-48 196.4 209 47.8
Carub.0002s0893 Capsella rubella HOM05D007002 ORTHO05D008602 3.9e-48 195.7 212 51.4
Prupe.6G348100 Prunus persica HOM05D007002 ORTHO05D008602 5.1e-48 195.3 189 51.3
BolC1t03414H Brassica oleracea HOM05D007002 ORTHO05D008602 1.5e-47 193.7 212 47.2
DCAR_028380 Daucus carota HOM05D007002 ORTHO05D008602 1.5e-47 193.7 213 49.3
BraA01t02842Z Brassica rapa HOM05D007002 ORTHO05D008602 1.9e-47 193.4 212 47.2
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 2.5e-47 193.0 219 46.1
BcaB04g20138 Brassica carinata HOM05D007002 ORTHO05D008602 3.3e-47 192.6 213 46.9
BcaC09g49617 Brassica carinata HOM05D007002 ORTHO05D008602 5.7e-47 191.8 212 47.6
VMungo0720G3075 Vigna mungo HOM05D007002 ORTHO05D008602 9.7e-47 191.0 212 47.6
PGR142G1318 Punica granatum HOM05D007002 ORTHO05D008602 1.6e-46 190.3 214 47.7
C01p34450 Brassica napus HOM05D007002 ORTHO05D008602 2.8e-46 189.5 212 47.2
Thhalv10023577m.g Eutrema salsugineum HOM05D007002 ORTHO05D008602 2.8e-46 189.5 236 45.3
CARHR055790 Cardamine hirsuta HOM05D007002 ORTHO05D008602 3.7e-46 189.1 217 46.1
Medtr1g079800 Medicago truncatula HOM05D007002 ORTHO05D008602 4.8e-46 188.7 241 43.2
Lalb_Chr02g0149211 Lupinus albus HOM05D007002 ORTHO05D008602 1.1e-45 187.6 211 46.9
AT1G54650 Arabidopsis thaliana HOM05D007002 ORTHO05D008602 1.4e-45 187.2 212 47.6
AL1G65080 Arabidopsis lyrata HOM05D007002 ORTHO05D008602 5.3e-45 185.3 212 48.6
A01p27070 Brassica napus HOM05D007002 ORTHO05D008602 5.3e-45 185.3 212 47.2
Phvul.L001632 Phaseolus vulgaris HOM05D007002 ORTHO05D008602 2.6e-44 183.0 213 45.5
THA.LOC104805807 Tarenaya hassleriana HOM05D007002 ORTHO05D008602 1.3e-43 180.6 226 46.0
MELO3C004416.2 Cucumis melo HOM05D007002 ORTHO05D008602 2.9e-43 179.5 220 46.4
SpUN0002_0110 Schrenkiella parvula HOM05D007002 ORTHO05D008602 6.5e-43 178.3 217 46.1
vmacro20004 Vaccinium macrocarpon HOM05D007002 ORTHO05D008602 6.5e-43 178.3 303 37.6
FAN05G0162 Fragaria x ananassa HOM05D007002 ORTHO05D008602 1.9e-42 176.8 215 44.2
Os07g0414200 Oryza sativa ssp. japonica HOM05D007002 ORTHO05D008602 2.5e-42 176.4 218 44.0
Lj5g0000328 Lotus japonicus HOM05D007002 ORTHO05D008602 3.6e-41 172.6 215 43.3
Zm00001eb305860 Zea mays HOM05D007002 ORTHO05D008602 3.6e-41 172.6 213 41.3
FAN14G0334 Fragaria x ananassa HOM05D007002 ORTHO05D008602 3.3e-39 166.0 215 41.9
SEGI_16446 Sequoiadendron giganteum HOM05D007002 ORTHO05D008602 4.1e-37 159.1 178 47.8
arahy.Tifrunner.gnm1.ann1.LR4863 Arachis hypogaea HOM05D007002 ORTHO05D008602 3.4e-36 156.0 213 41.8
Hma1.2p1_0345F.1_g131180 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 5.9e-36 155.2 138 56.5
Hma1.2p1_1181F.1_g264745 Hydrangea macrophylla HOM05D007002 ORTHO05D008602 1.3e-35 154.1 138 55.8
Lj2A39T65 Lonicera japonica HOM05D007002 ORTHO05D008602 1.1e-31 141.0 142 52.8
Mapoly0013s0147 Marchantia polymorpha HOM05D007002 ORTHO05D008602 2.2e-30 136.7 225 37.8
AagrBONN_evm.TU.Sc2ySwM_117.599 Anthoceros agrestis HOM05D007002 ORTHO05D008602 6.3e-30 135.2 183 42.6
Pp3c26_7960 Physcomitrium patens HOM05D007002 ORTHO05D008602 1.7e-27 127.1 218 35.3
unitig_60.g25820 Utricularia gibba HOM05D007002 ORTHO05D008602 6.1e-25 118.6 100 59.0
Dinv06983 Davidia involucrata HOM05D007002 ORTHO05D008602 3.7e-22 109.4 102 52.9
SMO203G0057 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 4.5e-20 102.4 117 46.2
SMO353G0035 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 1.7e-19 100.5 128 42.2
SalBow6G6869 Salvia bowleyana HOM05D007002 ORTHO05D008602 4.2e-18 95.9 137 43.8
TAR362G0944 Trochodendron aralioides HOM05D007002 ORTHO05D008602 3.6e-17 92.8 101 45.5
TAR572G0001 Trochodendron aralioides HOM05D007002 ORTHO05D008602 1.4e-16 90.9 99 49.5
SMO364G0434 Selaginella moellendorffii HOM05D007002 ORTHO05D008602 4.8e-14 82.4 163 34.4
CBR_g24276 Chara braunii HOM05D000785 ORTHO05D000231 4.5e-12 75.9 111 37.8
Cpa.g.sc2388.3 Carica papaya HOM05D007002 ORTHO05D008602 1.3e-11 74.3 80 47.5
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 1.6e-09 67.4 134 33.6
FAN17G0300 Fragaria x ananassa HOM05D007002 ORTHO05D008602 4.7e-09 65.9 44 61.4
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 2.3e-08 63.5 114 32.5
Cre05.g239050 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D004895 5.2e-08 62.4 75 41.3
CARHR115020 Cardamine hirsuta HOM05D001920 ORTHO05D004895 1.5e-07 60.8 108 31.5
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.5e-07 60.8 132 31.1
THA.LOC104819893 Tarenaya hassleriana HOM05D001920 ORTHO05D004895 2.0e-07 60.5 102 34.3
Cre16.g668100 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D008602 2.6e-07 60.1 105 31.4
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 3.4e-07 59.7 114 31.6
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 3.4e-07 59.7 112 30.4
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 3.4e-07 59.7 112 31.2
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 3.4e-07 59.7 112 31.2
Hund03323 Selenicereus undatus HOM05D001920 ORTHO05D004895 3.4e-07 59.7 108 31.5
AT2G26200 Arabidopsis thaliana HOM05D001920 ORTHO05D004895 4.4e-07 59.3 114 29.8
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 5.7e-07 58.9 108 31.5
Lalb_Chr24g0399761 Lupinus albus HOM05D001920 ORTHO05D004895 5.7e-07 58.9 90 35.6
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 7.5e-07 58.5 97 35.1
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 9.8e-07 58.2 97 35.1
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 9.8e-07 58.2 90 33.3
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 9.8e-07 58.2 107 32.7
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 1.3e-06 57.8 90 36.7
PRCOL_00005531 Prasinoderma coloniale HOM05D007002 ORTHO05D008602 1.3e-06 57.8 88 38.6
Sp4g06300 Schrenkiella parvula HOM05D001920 ORTHO05D004895 1.3e-06 57.8 138 28.3
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.7e-06 57.4 145 29.0
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 1.7e-06 57.4 79 38.0
VMungo0647G0099 Vigna mungo HOM05D001920 ORTHO05D004895 1.7e-06 57.4 79 38.0
AL4G18730 Arabidopsis lyrata HOM05D001920 ORTHO05D004895 2.2e-06 57.0 114 28.9
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 2.2e-06 57.0 108 33.3
Thhalv10001947m.g Eutrema salsugineum HOM05D001920 ORTHO05D004895 2.2e-06 57.0 114 28.1
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 3.7e-06 56.2 108 31.5
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 3.7e-06 56.2 154 29.2
GSVIVG01016814001 Vitis vinifera HOM05D001920 ORTHO05D004895 3.7e-06 56.2 84 38.1
HPP92_005010 Vanilla planifolia HOM05D001920 ORTHO05D004895 4.9e-06 55.8 108 32.4
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 6.3e-06 55.5 102 31.4
PGR119G1597 Punica granatum HOM05D001920 ORTHO05D004895 6.3e-06 55.5 99 33.3
unitig_748.g8245 Utricularia gibba HOM05D001920 ORTHO05D004895 6.3e-06 55.5 73 41.1
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 8.3e-06 55.1 96 34.4
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 8.3e-06 55.1 94 35.1


User provided reference genes

Program Settings