Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 6.2e-211 737.3 390 100.0
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 8.2e-195 683.7 392 93.9
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 1.4e-194 682.9 390 93.8
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 8.8e-173 610.5 395 85.1
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.1e-170 601.7 393 84.7
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 3.5e-169 598.6 406 82.0
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 3.0e-165 585.5 372 86.3
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.6e-134 483.4 409 67.7
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 1.8e-133 479.9 398 68.3
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.2e-132 477.2 396 67.9
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 3.4e-132 475.7 406 65.5
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 5.8e-132 474.9 406 66.3
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 1.7e-131 473.4 409 65.8
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.2e-131 473.0 409 64.1
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 6.4e-131 471.5 355 71.0
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 8.4e-131 471.1 362 70.4
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 8.4e-131 471.1 360 71.7
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 1.9e-130 469.9 364 70.3
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.4e-130 469.5 411 64.5
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 2.4e-130 469.5 415 64.8
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 7.1e-130 468.0 411 64.0
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 2.1e-129 466.5 415 64.3
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 7.8e-129 464.5 363 68.6
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 3.0e-128 462.6 406 65.5
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 3.0e-128 462.6 357 70.3
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 3.3e-127 459.1 410 64.6
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 5.6e-127 458.4 400 65.2
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.2e-126 457.2 403 65.0
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 1.2e-126 457.2 413 63.2
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 4.7e-126 455.3 424 62.5
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 8.1e-126 454.5 400 66.5
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 1.1e-125 454.1 401 63.8
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 3.1e-125 452.6 400 64.2
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 6.8e-125 451.4 416 61.8
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 8.9e-125 451.1 408 64.2
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.5e-124 450.3 406 63.1
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 1.5e-124 450.3 396 63.1
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.4e-124 448.7 425 62.4
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 4.4e-124 448.7 409 62.1
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 5.8e-124 448.4 408 63.0
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 9.9e-124 447.6 401 63.8
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 1.1e-122 444.1 405 64.0
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 2.4e-122 443.0 365 67.4
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 4.2e-122 442.2 390 65.1
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 5.4e-122 441.8 416 60.8
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.2e-121 440.7 401 61.8
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.6e-121 440.3 433 60.7
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.6e-121 440.3 409 62.6
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 4.6e-121 438.7 424 62.3
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.8e-121 438.0 433 60.3
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.0e-120 437.6 427 60.9
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.3e-120 436.4 398 63.1
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 3.0e-120 436.0 400 61.5
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 3.9e-120 435.6 335 70.7
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 8.7e-120 434.5 395 62.5
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 4.3e-119 432.2 433 59.4
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 4.3e-119 432.2 425 59.3
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 5.6e-119 431.8 429 59.4
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 9.6e-119 431.0 413 61.3
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.3e-118 430.6 398 62.8
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.3e-118 430.6 424 59.9
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 2.4e-117 426.4 435 58.6
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.4e-117 426.4 440 57.3
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 3.1e-117 426.0 402 61.2
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 4.0e-117 425.6 403 61.3
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 9.0e-117 424.5 422 59.2
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.5e-116 423.7 422 60.4
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 3.4e-116 422.5 401 61.1
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 3.4e-116 422.5 416 59.4
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 4.4e-116 422.2 406 60.6
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 7.6e-116 421.4 412 59.7
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 9.9e-116 421.0 398 61.3
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.3e-115 420.6 341 68.0
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 6.4e-115 418.3 523 51.2
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 2.4e-114 416.4 407 60.7
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 3.2e-114 416.0 426 56.8
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.2e-114 416.0 438 58.2
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 7.1e-114 414.8 429 57.3
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.7e-113 412.9 432 58.1
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 2.7e-113 412.9 440 57.7
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.5e-113 412.5 438 58.0
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 6.0e-113 411.8 438 58.0
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 3.0e-112 409.5 425 56.9
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 6.6e-112 408.3 350 66.0
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.1e-111 407.5 432 54.9
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.5e-111 407.1 430 56.0
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 1.9e-111 406.8 423 57.7
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 3.3e-111 406.0 428 57.0
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 4.3e-111 405.6 405 60.0
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 2.6e-108 396.4 429 55.9
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.9e-106 390.2 401 59.4
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.6e-105 387.1 400 57.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 6.0e-105 385.2 410 57.3
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.1e-103 380.9 379 57.3
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 8.1e-102 374.8 426 54.0
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 1.1e-101 374.4 426 54.0
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 5.5e-98 362.1 429 52.4
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 1.1e-95 354.4 328 61.3
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 2.1e-94 350.1 366 56.6
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 2.2e-91 340.1 338 54.7
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 6.7e-88 328.6 320 61.9
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.3e-86 324.3 305 62.0
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.3e-83 314.3 271 64.2
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.8e-78 296.6 260 58.1
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 3.7e-78 296.2 398 47.2
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 8.5e-75 285.0 312 56.1
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 1.4e-72 277.7 325 50.2
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 2.3e-72 276.9 408 43.6
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.7e-67 260.8 295 50.8
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 1.2e-65 254.6 204 69.6
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 1.0e-56 224.9 392 38.8
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 8.3e-46 188.7 134 73.1
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 4.1e-45 186.4 143 69.2
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 2.5e-42 177.2 196 52.6
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 4.0e-32 143.3 88 76.1
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 2.0e-23 114.4 320 28.1
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 9.5e-18 95.5 86 60.5
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 7.6e-15 85.9 145 50.3
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 4.1e-13 80.1 233 30.5
PGSC0003DMG400028082 Solanum tuberosum HOM05D006391 ORTHO05D007767 9.2e-13 79.0 50 86.0
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 5.1e-11 73.2 66 53.0
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 5.1e-11 73.2 319 24.5
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-10 71.6 46 67.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.5e-10 70.9 46 65.2
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 7.6e-07 59.3 118 40.7


User provided reference genes

Program Settings