Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 2.9e-48 194.9 98 100.0
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 1.9e-44 182.2 98 95.9
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 3.4e-41 171.4 99 90.9
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 1.7e-32 142.5 99 75.8
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.9e-29 131.3 98 73.5
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.6e-28 128.6 98 71.4
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.7e-28 126.7 98 72.4
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 5.2e-21 104.4 102 60.8
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 8.2e-19 97.1 97 50.5
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.6e-17 92.8 97 49.5
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 2.0e-17 92.4 97 50.5
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 7.7e-17 90.5 98 53.1
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 7.7e-17 90.5 101 52.5
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.7e-16 89.4 99 49.5
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 1.7e-16 89.4 98 52.0
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 2.9e-16 88.6 92 52.2
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 3.8e-16 88.2 96 50.0
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 6.5e-16 87.4 90 55.6
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 8.5e-16 87.0 99 47.5
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 8.5e-16 87.0 109 45.9
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.5e-15 86.3 98 51.0
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.5e-15 86.3 101 49.5
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 1.9e-15 85.9 114 45.6
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.9e-15 85.9 98 49.0
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 2.5e-15 85.5 96 50.0
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 2.5e-15 85.5 65 60.0
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 2.5e-15 85.5 65 60.0
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 3.2e-15 85.1 90 51.1
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 3.2e-15 85.1 92 51.1
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 5.5e-15 84.3 100 50.0
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 2.1e-14 82.4 102 48.0
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.7e-14 82.0 99 47.5
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 4.7e-14 81.3 92 46.7
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 1.0e-13 80.1 97 46.4
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 1.4e-13 79.7 95 51.6
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 1.4e-13 79.7 94 48.9
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 1.8e-13 79.3 91 50.5
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 1.8e-13 79.3 70 54.3
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 2.3e-13 79.0 93 48.4
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 2.3e-13 79.0 91 50.5
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.0e-13 78.2 100 45.0
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 4.0e-13 78.2 93 49.5
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 6.8e-13 77.4 99 44.4
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 6.8e-13 77.4 99 44.4
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 6.8e-13 77.4 92 50.0
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 8.8e-13 77.0 97 44.3
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 1.2e-12 76.6 96 44.8
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 1.2e-12 76.6 92 46.7
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.5e-12 76.3 104 43.3
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 1.5e-12 76.3 93 45.2
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 2.6e-12 75.5 99 47.5
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 4.4e-12 74.7 104 44.2
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 7.5e-12 73.9 97 47.4
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 2.2e-11 72.4 98 41.8
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 6.3e-11 70.9 60 55.0
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 8.3e-11 70.5 84 47.6
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.1e-10 70.1 60 53.3
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.8e-10 69.3 86 48.8
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 9.1e-10 67.0 97 41.2
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 9.1e-10 67.0 99 41.4
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 1.6e-09 66.2 80 45.0
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.0e-09 65.9 92 41.3
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 7.7e-09 63.9 47 61.7
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 2.2e-08 62.4 50 58.0
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 2.2e-08 62.4 47 63.8
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 5.0e-08 61.2 47 57.4
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 6.5e-08 60.8 103 40.8
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 8.5e-08 60.5 91 41.8
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 1.1e-07 60.1 99 44.4
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 1.1e-07 60.1 96 37.5
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 1.1e-07 60.1 96 37.5
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 1.5e-07 59.7 100 40.0
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 1.5e-07 59.7 100 40.0
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 1.5e-07 59.7 97 40.2
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 1.9e-07 59.3 54 53.7
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 4.2e-07 58.2 102 39.2
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 4.2e-07 58.2 96 38.5
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 4.2e-07 58.2 96 38.5
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 9.4e-07 57.0 51 49.0
Psat5g082600 Pisum sativum HOM05D009255 ORTHO05D011239 1.2e-06 56.6 67 44.8
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 2.1e-06 55.8 98 37.8
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 2.7e-06 55.5 106 42.5
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 4.7e-06 54.7 102 38.2
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 4.7e-06 54.7 100 40.0
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 4.7e-06 54.7 93 38.7


User provided reference genes

Program Settings