Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 3.5e-70 268.5 165 100.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 3.5e-70 268.5 165 100.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 7.3e-68 260.8 165 90.9
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.9e-56 221.5 166 77.1
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.1e-47 193.7 147 72.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 5.6e-44 181.4 167 73.1
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 4.1e-39 165.2 166 57.8
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 4.1e-39 165.2 146 61.0
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 1.2e-38 163.7 145 63.4
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.0e-37 160.6 148 60.8
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 5.1e-37 158.3 143 61.5
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.1e-36 157.1 164 60.4
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.3e-36 155.6 150 72.7
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 4.3e-36 155.2 133 64.7
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 7.3e-36 154.5 141 58.2
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 9.6e-36 154.1 135 61.5
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.6e-35 153.3 149 59.7
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 2.8e-35 152.5 142 57.7
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.8e-34 149.8 140 59.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.8e-34 149.8 167 55.7
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.4e-34 149.4 166 52.4
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.4e-34 149.4 169 59.2
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 4.0e-34 148.7 169 54.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 5.2e-34 148.3 153 56.2
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 5.2e-34 148.3 144 56.2
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 5.2e-34 148.3 144 56.2
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 5.2e-34 148.3 148 57.4
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 5.2e-34 148.3 167 58.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 4.4e-33 145.2 124 62.1
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 5.8e-33 144.8 142 57.0
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.3e-32 143.7 122 59.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 1.3e-32 143.7 141 58.9
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.7e-32 143.3 140 55.7
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.7e-32 143.3 165 56.4
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 1.7e-32 143.3 155 56.1
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 3.8e-32 142.1 123 60.2
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 3.8e-32 142.1 164 57.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 4.9e-32 141.7 147 55.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 6.4e-32 141.4 113 64.6
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 8.4e-32 141.0 152 53.9
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.4e-31 140.2 145 56.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.9e-31 139.8 156 52.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.9e-31 139.8 171 56.1
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 2.4e-31 139.4 171 56.1
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 4.2e-31 138.7 152 53.3
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.2e-31 138.7 147 54.4
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 4.2e-31 138.7 139 55.4
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 7.1e-31 137.9 145 53.8
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 9.3e-31 137.5 136 53.7
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 9.3e-31 137.5 150 52.7
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 9.3e-31 137.5 147 53.7
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.2e-30 137.1 151 51.7
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.6e-30 136.7 156 53.8
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.1e-30 136.3 146 55.5
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.1e-30 136.3 169 49.1
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.7e-30 136.0 166 55.4
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 3.5e-30 135.6 156 50.6
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 3.5e-30 135.6 126 61.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.6e-30 135.2 122 61.5
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 6.0e-30 134.8 149 51.7
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 6.0e-30 134.8 140 50.7
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 7.8e-30 134.4 151 51.0
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 7.8e-30 134.4 148 50.0
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 7.8e-30 134.4 136 55.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 144 54.2
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.0e-29 134.0 141 51.1
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.3e-29 133.7 130 55.4
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.3e-29 133.7 153 51.0
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.7e-29 133.3 136 52.2
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 2.3e-29 132.9 138 51.4
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 3.0e-29 132.5 135 54.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 3.0e-29 132.5 150 50.7
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 3.0e-29 132.5 147 53.1
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 3.9e-29 132.1 153 50.3
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 5.1e-29 131.7 123 55.3
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 5.1e-29 131.7 123 55.3
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 6.6e-29 131.3 130 53.8
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 6.6e-29 131.3 130 53.8
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.5e-28 130.2 147 47.6
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.5e-28 130.2 152 49.3
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.3e-28 128.6 167 55.1
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 4.3e-28 128.6 147 50.3
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 5.6e-28 128.3 130 53.1
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 7.3e-28 127.9 144 54.2
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 9.6e-28 127.5 148 53.4
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.3e-27 127.1 122 55.7
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.3e-27 127.1 148 52.0
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.6e-27 126.7 139 54.7
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.8e-27 125.2 125 56.0
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 6.2e-27 124.8 155 51.0
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 8.1e-27 124.4 151 47.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-26 123.6 150 58.0
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.4e-26 123.6 145 47.6
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.8e-26 123.2 120 55.0
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.1e-26 122.5 173 45.7
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.1e-26 122.5 146 47.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 4.0e-26 122.1 167 51.5
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 4.0e-26 122.1 167 51.5
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 4.0e-26 122.1 167 51.5
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 4.0e-26 122.1 167 51.5
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 4.0e-26 122.1 167 51.5
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 6.9e-26 121.3 167 51.5
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 2.6e-25 119.4 118 55.1
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.6e-25 119.4 149 50.3
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 3.4e-25 119.0 177 45.8
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 4.5e-25 118.6 150 46.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 5.8e-25 118.2 167 50.9
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 9.9e-25 117.5 174 44.8
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 9.9e-25 117.5 165 46.7
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.3e-24 117.1 147 49.0
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.7e-24 116.7 121 52.9
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.9e-24 115.9 155 48.4
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 3.8e-24 115.5 126 52.4
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 4.9e-24 115.2 159 49.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.4e-24 114.8 164 50.0
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.9e-23 113.2 150 47.3
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.3e-23 110.9 100 59.0
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.6e-22 110.2 153 45.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 2.7e-22 109.4 148 48.0
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.9e-21 105.5 147 46.3
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.5e-20 103.6 119 49.6
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.9e-20 103.2 149 44.3
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-19 100.1 120 48.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.3e-18 95.1 154 42.9
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 6.9e-18 94.7 145 42.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.9e-16 88.6 153 41.8
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 8.4e-16 87.8 123 42.3
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 9.3e-15 84.3 123 45.5
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.3e-13 80.5 104 49.0
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 6.7e-13 78.2 147 36.7
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.9e-12 76.6 146 34.2
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.8e-10 70.1 48 66.7
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 4.0e-10 68.9 76 53.9
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 4.0e-10 68.9 169 39.6
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 4.0e-10 68.9 114 36.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.0e-09 66.6 118 40.7
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.7e-08 63.5 159 31.4
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.7e-08 63.5 102 43.1
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 7.1e-07 58.2 170 27.6
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.7e-06 56.2 129 34.9
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 3.5e-06 55.8 77 44.2
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 4.6e-06 55.5 40 55.0


User provided reference genes

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