Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 3.1e-148 528.5 278 100.0
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 4.2e-145 518.1 278 96.8
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.7e-138 496.1 278 91.7
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 2.7e-91 339.3 258 70.2
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 7.9e-83 311.2 239 68.6
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.3e-80 303.9 239 67.8
PGSC0003DMG400024738 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.3e-53 214.2 120 87.5
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 1.1e-44 184.5 156 62.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 2.6e-41 173.3 199 49.7
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 2.0e-38 163.7 165 50.3
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 1.3e-37 161.0 175 47.4
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 6.8e-34 148.7 178 45.5
PGSC0003DMG401012933 Solanum tuberosum HOM05D005305 ORTHO05D006394 3.8e-29 132.9 71 91.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 5.0e-29 132.5 152 45.4
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.6e-25 120.2 169 43.2
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.7e-24 117.5 140 48.6
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.4e-23 114.4 159 40.3
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.4e-23 114.4 154 43.5
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 2.4e-23 113.6 158 41.8
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 3.2e-23 113.2 165 42.4
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 5.4e-23 112.5 147 43.5
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 5.4e-23 112.5 224 33.5
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 9.2e-23 111.7 247 34.0
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 1.6e-22 110.9 175 37.7
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 2.0e-22 110.5 169 40.8
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 3.5e-22 109.8 147 43.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.9e-22 109.0 168 39.9
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 5.9e-22 109.0 167 40.1
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 5.9e-22 109.0 155 41.9
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 5.9e-22 109.0 150 43.3
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.0e-21 108.2 174 39.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 1.3e-21 107.8 146 46.6
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.3e-21 107.1 151 44.4
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 2.9e-21 106.7 181 39.8
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 3.9e-21 106.3 164 43.3
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 3.9e-21 106.3 164 43.3
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 3.9e-21 106.3 149 43.0
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 5.0e-21 105.9 160 41.9
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 6.6e-21 105.5 199 34.2
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.1e-20 104.8 155 41.9
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 2.5e-20 103.6 178 40.4
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 3.3e-20 103.2 177 35.6
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.3e-20 103.2 215 34.4
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 4.3e-20 102.8 154 40.3
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 4.3e-20 102.8 154 40.3
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.6e-20 102.4 153 40.5
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 7.3e-20 102.1 161 41.0
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 7.3e-20 102.1 152 43.4
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 7.3e-20 102.1 157 41.4
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 9.5e-20 101.7 192 34.9
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.2e-19 101.3 145 44.1
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 1.6e-19 100.9 146 42.5
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.6e-19 100.9 150 43.3
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 1.6e-19 100.9 203 35.0
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 2.1e-19 100.5 146 43.2
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 2.1e-19 100.5 146 39.7
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 2.8e-19 100.1 164 40.9
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.8e-19 100.1 153 39.2
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 3.6e-19 99.8 153 40.5
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 4.7e-19 99.4 161 40.4
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.0e-18 98.2 146 39.0
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.0e-18 98.2 146 39.0
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 1.0e-18 98.2 146 39.0
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.4e-18 97.8 185 35.1
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.4e-18 97.8 152 38.2
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-18 97.4 146 39.0
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.8e-18 97.4 146 39.0
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.8e-18 97.4 154 38.3
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.8e-18 97.4 177 33.3
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 3.1e-18 96.7 180 38.3
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 6.8e-18 95.5 152 37.5
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 1.2e-17 94.7 151 39.7
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.5e-17 94.4 150 39.3
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.0e-17 94.0 151 43.7
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 2.6e-17 93.6 151 43.0
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 3.4e-17 93.2 211 34.1
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.4e-17 93.2 183 33.9
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 3.4e-17 93.2 159 35.2
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 3.4e-17 93.2 147 38.8
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.4e-17 92.8 151 43.7
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 5.8e-17 92.4 170 36.5
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 7.5e-17 92.0 146 37.0
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.3e-16 91.3 146 37.0
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.3e-16 91.3 155 34.2
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.3e-16 91.3 146 37.0
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.7e-16 90.9 183 36.6
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 2.2e-16 90.5 146 37.7
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 2.9e-16 90.1 155 38.7
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 3.7e-16 89.7 146 37.0
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 4.9e-16 89.4 146 40.4
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.9e-16 89.4 151 39.7
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 8.3e-16 88.6 147 37.4
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.1e-15 88.2 150 36.0
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.4e-15 87.8 152 39.5
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 1.9e-15 87.4 149 38.9
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.4e-15 87.0 161 38.5
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.4e-15 87.0 146 37.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 3.2e-15 86.7 148 36.5
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 3.2e-15 86.7 148 36.5
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 3.2e-15 86.7 148 36.5
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 3.2e-15 86.7 148 36.5
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.4e-15 85.9 151 37.1
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.6e-14 84.3 148 36.5
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-14 82.8 150 38.7
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.3e-13 81.3 149 38.3
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.0e-13 79.3 151 37.1
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 6.6e-13 79.0 88 48.9
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.5e-12 77.8 93 46.2
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.9e-12 77.4 167 35.3
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.1e-10 71.6 156 37.2
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 1.2e-09 68.2 147 36.1
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 9.8e-09 65.1 112 38.4
SGA_v2.0_scaffold65G22173 Striga asiatica HOM05D005305 ORTHO05D006394 1.7e-08 64.3 61 49.2
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.9e-08 63.5 178 28.7
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 4.9e-08 62.8 165 32.7
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 1.4e-07 61.2 163 34.4
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.1e-07 58.9 118 33.9
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.1e-07 58.9 94 38.3
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 9.2e-07 58.5 94 38.3
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-06 57.4 118 34.7
Sabra19G0015300 Salix brachista HOM05D005305 ORTHO05D006394 2.1e-06 57.4 131 29.8
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 2.1e-06 57.4 150 32.0
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.5e-06 56.6 155 33.5
EL10Ac4g08760 Beta vulgaris HOM05D005305 ORTHO05D006394 4.6e-06 56.2 86 39.5
Nn1g04620 Nelumbo nucifera HOM05D005305 ORTHO05D006394 4.6e-06 56.2 73 43.8
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 6.0e-06 55.8 156 28.2
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 7.8e-06 55.5 97 33.0


User provided reference genes

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