Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.5e-280 969.1 590 100.0
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 7.6e-277 956.8 590 98.6
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 2.0e-253 879.0 596 92.8
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 7.0e-206 721.1 606 79.4
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.2e-198 695.7 606 76.9
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 4.6e-197 691.8 622 77.2
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 4.9e-183 645.2 603 74.6
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 7.4e-123 445.3 610 58.9
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 7.2e-118 428.7 605 57.4
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 3.0e-116 423.3 639 56.5
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 6.7e-116 422.2 521 62.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-114 417.2 557 59.4
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.2e-114 417.2 557 59.4
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 1.2e-112 411.4 562 57.7
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 7.7e-112 408.7 533 59.7
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 1.3e-111 407.9 653 53.4
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.1e-110 404.8 484 61.8
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.5e-110 404.4 581 57.3
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.5e-110 404.4 496 62.9
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.9e-110 404.1 589 55.3
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 7.2e-110 402.1 538 59.3
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 7.2e-110 402.1 558 57.0
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.2e-109 401.4 608 54.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.6e-109 401.0 569 58.3
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 4.7e-109 399.4 469 61.4
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.3e-108 397.1 550 58.7
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 8.2e-106 388.7 596 55.4
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 2.4e-105 387.1 533 59.5
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.4e-105 387.1 597 54.1
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 7.0e-105 385.6 534 57.5
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 4.5e-104 382.9 539 57.7
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 4.5e-104 382.9 539 57.7
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 1.3e-103 381.3 506 44.9
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 5.0e-103 379.4 592 56.6
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 6.5e-103 379.0 474 61.8
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 8.5e-103 378.6 603 52.9
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 9.4e-102 375.2 596 54.2
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.2e-101 374.8 586 54.6
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.7e-101 373.6 608 52.1
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.0e-100 370.2 541 56.0
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 3.0e-100 370.2 455 60.2
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 8.8e-100 368.6 616 51.0
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 8.8e-100 368.6 440 47.7
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 2.0e-99 367.5 498 58.6
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 4.4e-99 366.3 591 52.6
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.4e-99 366.3 440 47.5
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 9.8e-99 365.2 483 61.9
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 2.2e-98 364.0 606 52.1
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 8.3e-98 362.1 600 53.2
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 5.4e-97 359.4 497 59.0
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.0e-97 359.0 563 54.5
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.2e-96 358.2 547 50.6
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 2.7e-96 357.1 613 50.6
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 1.0e-95 355.1 344 58.4
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.0e-95 355.1 469 60.6
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.3e-95 354.8 590 53.1
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 2.9e-95 353.6 609 48.6
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 3.8e-95 353.2 618 51.6
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 6.5e-95 352.4 658 50.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 7.2e-94 349.0 464 60.1
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 9.5e-94 348.6 502 57.0
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 8.0e-93 345.5 464 59.9
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.0e-92 345.1 503 57.7
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 6.8e-92 342.4 385 50.9
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.5e-91 341.3 514 57.4
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.6e-91 340.5 610 50.8
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 6.3e-90 335.9 522 52.7
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 9.2e-89 332.0 476 58.8
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.1e-86 325.1 475 56.8
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 7.3e-86 322.4 485 55.7
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.3e-84 317.4 602 50.2
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 4.0e-84 316.6 547 53.4
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.3e-82 311.6 597 49.2
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 9.2e-81 305.4 462 40.5
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.3e-79 301.6 611 48.4
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 6.6e-79 299.3 507 51.3
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 1.1e-78 298.5 599 48.4
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 2.8e-77 293.9 470 54.5
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.1e-76 290.4 387 45.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 3.1e-76 290.4 566 47.0
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 3.1e-76 290.4 598 47.8
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.2e-75 288.5 569 44.1
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 7.5e-75 285.8 535 49.3
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 6.4e-74 282.7 570 48.4
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.2e-72 278.5 602 47.3
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 2.0e-72 277.7 533 51.6
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 6.0e-72 276.2 595 46.7
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 1.0e-71 275.4 614 46.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 2.3e-71 274.2 595 46.6
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.1e-68 265.4 500 53.2
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 3.4e-67 260.4 592 46.5
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 3.4e-67 260.4 585 46.7
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 3.4e-67 260.4 586 46.8
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 3.4e-67 260.4 586 46.8
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 3.4e-67 260.4 610 45.6
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.3e-66 258.5 576 47.0
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 3.2e-65 253.8 593 45.9
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 5.4e-65 253.1 577 46.8
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.2e-64 251.9 574 46.0
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 4.6e-64 250.0 407 41.3
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 5.6e-62 243.0 496 34.3
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 4.7e-61 240.0 608 44.9
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 3.1e-60 237.3 411 38.9
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.2e-60 236.5 515 34.4
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 8.9e-60 235.7 530 48.3
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 8.7e-55 219.2 573 42.6
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.4e-52 211.1 235 48.1
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 8.4e-50 202.6 310 42.6
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 8.4e-50 202.6 441 45.1
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.1e-49 202.2 439 33.3
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 5.1e-39 166.8 489 41.3
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 4.0e-36 157.1 165 51.5
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.4e-33 147.9 375 31.7
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-32 145.2 360 30.6
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-29 135.6 318 34.3
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.4e-25 122.1 317 30.9
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 5.1e-23 113.6 304 31.6
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.1e-20 105.9 299 29.8
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 9.0e-20 102.8 72 69.4
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.0e-19 101.7 66 71.2
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.6e-16 92.0 159 38.4
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.6e-16 92.0 159 38.4
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 3.0e-15 87.8 174 32.8
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 3.9e-15 87.4 72 63.9
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 6.7e-15 86.7 110 45.5
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 1.1e-14 85.9 62 64.5
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 7.4e-14 83.2 207 31.4
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 9.1e-12 76.3 220 32.3
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 7.7e-11 73.2 135 33.3
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 2.2e-10 71.6 106 38.7
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 5.0e-10 70.5 173 28.3
TWI74G0317 Tripterygium wilfordii HOM05D006596 ORTHO05D008497 1.1e-09 69.3 248 25.8
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 3.2e-09 67.8 66 47.0
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 4.2e-09 67.4 163 30.7
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 7.2e-09 66.6 173 27.7
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 7.2e-09 66.6 173 27.7
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 7.2e-09 66.6 55 67.3
Gohir.A11G054800 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.6e-08 65.5 173 27.2
Gohir.D13G171600 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.7e-08 64.7 173 27.2
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 2.7e-08 64.7 60 46.7
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 1.0e-07 62.8 172 29.7
Gohir.D13G171200 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.0e-07 62.8 173 26.6
VMungo0251G1276 Vigna mungo HOM05D007661 ORTHO05D009671 2.3e-07 61.6 150 25.3
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 5.1e-07 60.5 248 25.4
QL11p020645 Quercus lobata HOM05D007661 ORTHO05D009671 8.8e-07 59.7 176 25.6
Phvul.002G208300 Phaseolus vulgaris HOM05D007661 ORTHO05D009671 5.7e-06 57.0 150 24.7
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 9.7e-06 56.2 183 24.6


User provided reference genes

Program Settings