Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 2.9e-142 508.4 243 100.0
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 9.8e-130 466.8 243 94.2
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.4e-120 436.4 241 89.6
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 2.4e-120 435.6 240 87.1
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 2.4e-112 409.1 222 87.4
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 2.5e-109 399.1 239 78.7
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 2.5e-109 399.1 239 79.5
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 7.3e-109 397.5 239 77.8
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 4.7e-108 394.8 243 78.2
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 1.4e-107 393.3 239 77.8
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 4.0e-107 391.7 239 78.7
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 6.8e-107 391.0 243 77.4
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 6.8e-107 391.0 239 78.2
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 8.9e-107 390.6 239 77.4
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.5e-106 389.8 239 75.7
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 2.6e-106 389.0 239 77.0
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.7e-105 386.3 239 76.2
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 6.4e-105 384.4 239 77.0
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 6.4e-105 384.4 239 75.7
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 1.1e-104 383.6 239 76.2
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.9e-104 382.9 239 76.2
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 4.2e-104 381.7 239 74.9
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 4.2e-104 381.7 250 73.6
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 7.1e-104 380.9 239 77.0
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.2e-103 380.2 239 77.0
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 1.2e-103 380.2 239 75.7
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 1.6e-103 379.8 239 74.9
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 2.1e-103 379.4 240 73.3
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 2.1e-103 379.4 239 74.9
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 2.7e-103 379.0 239 75.7
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 6.0e-103 377.9 240 72.9
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 7.8e-103 377.5 239 73.6
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.7e-102 376.3 240 72.5
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 3.0e-102 375.6 240 72.1
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 3.0e-102 375.6 239 73.2
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 3.9e-102 375.2 248 72.6
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 3.9e-102 375.2 243 73.7
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 3.9e-102 375.2 237 75.9
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 5.1e-102 374.8 240 72.5
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 6.6e-102 374.4 240 72.1
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 8.7e-102 374.0 239 73.2
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 8.7e-102 374.0 239 75.3
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.1e-101 373.6 251 72.1
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 1.9e-101 372.9 239 73.6
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.3e-101 372.1 240 71.7
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.3e-101 372.1 240 71.7
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 9.6e-101 370.5 247 71.3
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.6e-100 369.8 239 71.1
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 2.8e-100 369.0 239 72.4
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 4.7e-100 368.2 239 73.2
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 8.1e-100 367.5 288 63.9
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 8.1e-100 367.5 257 69.6
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.4e-99 366.7 245 71.4
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 1.4e-99 366.7 240 73.3
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.8e-99 366.3 240 72.5
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 5.3e-99 364.8 247 70.9
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 5.3e-99 364.8 247 70.9
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 5.3e-99 364.8 241 72.2
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 5.3e-99 364.8 239 72.0
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 9.0e-99 364.0 239 71.5
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 1.2e-98 363.6 239 71.5
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 1.2e-98 363.6 239 71.1
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.2e-98 363.6 239 72.4
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 2.0e-98 362.8 239 72.0
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.6e-98 362.5 241 71.8
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 4.4e-98 361.7 241 71.8
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 5.8e-98 361.3 239 72.8
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 1.3e-97 360.1 242 69.8
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.3e-97 360.1 239 70.7
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 1.7e-97 359.8 239 71.5
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 2.9e-97 359.0 239 69.0
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 4.9e-97 358.2 239 72.0
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.1e-96 357.1 241 70.1
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 1.4e-96 356.7 237 73.0
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 4.2e-96 355.1 239 69.5
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 5.4e-96 354.8 239 69.5
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 7.1e-96 354.4 241 71.0
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.2e-95 353.6 239 68.2
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 3.5e-95 352.1 228 71.5
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 4.6e-95 351.7 239 69.9
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 4.6e-95 351.7 244 70.5
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 6.0e-95 351.3 241 68.9
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 5.1e-94 348.2 239 67.8
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 6.2e-92 341.3 225 72.0
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 1.1e-91 340.5 222 71.6
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 1.5e-90 336.7 240 68.3
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 3.4e-90 335.5 241 66.0
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 9.9e-90 334.0 241 65.6
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 2.2e-89 332.8 222 69.8
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 6.7e-86 321.2 243 65.0
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 8.1e-84 314.3 239 62.3
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 6.4e-81 304.7 229 65.9
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 9.0e-75 284.3 183 74.3
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.3e-73 280.4 275 54.9
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 5.5e-72 275.0 257 58.4
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 7.1e-72 274.6 180 73.9
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 3.5e-71 272.3 246 59.3
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 1.3e-70 270.4 173 74.6
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 5.7e-69 265.0 264 54.2
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 4.8e-68 261.9 284 52.5
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.4e-67 259.6 163 77.3
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 3.1e-67 259.2 180 67.2
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 5.9e-66 255.0 288 52.4
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 5.9e-66 255.0 288 52.4
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.3e-62 243.0 239 54.4
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 3.9e-62 242.3 155 72.3
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 5.1e-62 241.9 183 65.6
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 1.1e-61 240.7 239 53.6
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.5e-61 240.4 239 55.2
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.5e-61 240.4 236 49.6
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 3.8e-57 225.7 235 46.0
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 1.4e-54 217.2 156 66.0
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 3.9e-54 215.7 243 49.8
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.5e-53 213.8 147 69.4
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 1.2e-50 204.1 241 40.7
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.3e-49 200.7 161 62.7
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 5.5e-48 195.3 118 72.9
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 4.7e-39 165.6 196 41.8
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.2e-37 161.0 93 76.3
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 1.4e-30 137.5 212 32.5
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 4.0e-30 136.0 170 47.6
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.6e-23 112.8 92 62.0
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 1.0e-22 111.3 284 26.8
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 1.4e-22 110.9 75 69.3
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 3.4e-21 106.3 67 70.1
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.4e-19 100.1 55 80.0
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 2.3e-14 83.6 235 25.5
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.7e-12 77.4 51 68.6
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 4.0e-06 56.2 178 25.3
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 4.0e-06 56.2 178 25.3
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 5.2e-06 55.8 198 25.8


User provided reference genes

Program Settings