Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 1.4e-110 402.9 200 100.0
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 2.3e-108 395.6 200 97.5
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 3.4e-96 355.1 201 89.1
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 8.8e-68 260.8 204 70.1
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.8e-57 226.5 205 65.4
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 4.7e-45 185.3 180 56.1
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 5.7e-43 178.3 126 71.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 1.3e-42 177.2 142 66.9
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 3.7e-42 175.6 146 63.7
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 4.9e-42 175.3 129 69.0
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 6.3e-42 174.9 136 63.2
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.1e-41 174.1 133 67.7
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 1.1e-41 174.1 133 66.2
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.1e-41 174.1 133 66.2
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 1.4e-41 173.7 96 82.3
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 2.4e-41 172.9 129 66.7
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 2.4e-41 172.9 97 80.4
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 2.4e-41 172.9 97 80.4
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 2.4e-41 172.9 140 64.3
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 2.4e-41 172.9 100 78.0
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 4.1e-41 172.2 103 74.8
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 4.1e-41 172.2 133 65.4
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 7.0e-41 171.4 96 80.2
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 9.2e-41 171.0 142 63.4
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 1.6e-40 170.2 95 80.0
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 4.5e-40 168.7 154 61.7
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 5.9e-40 168.3 152 59.2
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 5.9e-40 168.3 139 60.4
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 1.0e-39 167.5 130 65.4
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 1.3e-39 167.2 96 78.1
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 1.3e-39 167.2 151 59.6
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.3e-39 167.2 161 56.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 1.7e-39 166.8 151 59.6
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 2.3e-39 166.4 151 58.9
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.3e-39 166.4 165 52.1
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 2.9e-39 166.0 132 65.9
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 5.0e-39 165.2 152 57.2
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 1.9e-38 163.3 141 58.2
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 4.3e-38 162.2 107 70.1
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 1.2e-37 160.6 146 60.3
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 2.1e-37 159.8 96 75.0
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 3.6e-37 159.1 116 67.2
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 6.1e-37 158.3 140 60.0
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 1.8e-36 156.8 134 61.9
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 2.0e-35 153.3 149 55.0
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 2.6e-35 152.9 142 58.5
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 3.4e-35 152.5 178 53.9
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 4.4e-35 152.1 134 63.4
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 7.5e-35 151.4 109 69.7
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 9.8e-35 151.0 120 63.3
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.3e-34 150.6 150 58.7
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.3e-34 150.6 150 58.7
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.3e-34 150.6 150 58.7
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.3e-34 150.6 120 62.5
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 1.3e-34 150.6 96 75.0
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 2.2e-34 149.8 118 64.4
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 2.9e-34 149.4 134 61.9
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 2.9e-34 149.4 134 61.9
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 2.9e-34 149.4 145 58.6
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 3.7e-34 149.1 119 63.0
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 6.4e-34 148.3 97 73.2
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 6.4e-34 148.3 134 61.2
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 6.4e-34 148.3 95 72.6
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 1.4e-33 147.1 129 60.5
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 2.4e-33 146.4 150 54.7
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 3.2e-33 146.0 150 56.0
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 5.4e-33 145.2 97 71.1
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 5.4e-33 145.2 134 60.4
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 9.2e-33 144.4 96 69.8
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 4.6e-32 142.1 151 52.3
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 6.0e-32 141.7 127 59.1
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 7.8e-32 141.4 96 69.8
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 7.8e-32 141.4 139 51.8
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 1.0e-31 141.0 140 57.9
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 1.1e-30 137.5 128 56.2
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 2.5e-30 136.3 170 45.9
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 3.3e-30 136.0 96 66.7
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 2.1e-29 133.3 129 55.8
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 2.8e-29 132.9 86 70.9
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 4.7e-29 132.1 128 53.1
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 3.1e-28 129.4 133 54.9
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 3.1e-28 129.4 133 54.9
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 4.4e-27 125.6 113 57.5
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 7.5e-27 124.8 127 59.1
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 1.7e-26 123.6 129 56.6
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 2.2e-26 123.2 120 55.8
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 4.9e-26 122.1 102 62.7
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 2.5e-22 109.8 129 50.4
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 3.3e-22 109.4 89 60.7
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 1.4e-20 104.0 66 72.7
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 2.3e-20 103.2 100 58.0
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 7.5e-19 98.2 119 50.4
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 9.9e-19 97.8 92 51.1
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 9.9e-19 97.8 97 56.7
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.7e-18 97.1 102 54.9
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 6.4e-18 95.1 96 56.2
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 2.1e-16 90.1 67 67.2
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 2.1e-16 90.1 62 71.0
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.5e-16 89.4 82 54.9
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 6.0e-16 88.6 124 47.6
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 8.6e-15 84.7 118 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 4.3e-14 82.4 104 49.0
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 8.9e-12 74.7 75 57.3
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 1.5e-11 73.9 101 44.6
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 3.8e-10 69.3 174 32.2
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 1.3e-07 60.8 114 36.0


User provided reference genes

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