Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 1.3e-146 523.1 283 100.0
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 7.2e-132 474.2 283 90.8
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 4.7e-115 418.3 283 85.9
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 6.3e-104 381.3 283 76.0
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 8.5e-101 370.9 283 75.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 4.0e-74 282.3 286 64.0
PGSC0003DMG402019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 5.8e-65 251.9 139 87.8
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 6.2e-59 231.9 299 51.8
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.8e-57 225.3 298 50.0
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 6.4e-56 221.9 297 49.8
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.4e-55 220.7 301 51.2
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 5.4e-55 218.8 299 48.8
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.2e-54 217.6 301 54.2
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 9.0e-50 201.4 295 46.4
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 3.6e-43 179.5 294 40.1
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 3.7e-35 152.9 293 37.9
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.8e-34 150.6 267 40.4
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 3.1e-34 149.8 286 38.1
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 7.6e-33 145.2 300 35.7
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 1.7e-32 144.1 264 39.4
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.4e-31 140.2 274 39.4
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.2e-30 137.9 291 38.8
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.6e-30 137.5 284 38.4
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 4.6e-30 136.0 268 38.1
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.0e-29 134.8 271 43.5
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.8e-29 134.0 281 43.4
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.9e-29 132.9 281 43.1
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.1e-27 127.1 297 36.7
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 4.8e-27 125.9 264 34.8
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 8.2e-27 125.2 309 34.6
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.1e-26 124.8 217 39.6
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.8e-26 124.0 217 39.2
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 3.1e-26 123.2 262 37.4
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 9.0e-26 121.7 275 33.5
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.2e-25 121.3 232 35.8
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 2.6e-25 120.2 198 42.9
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.6e-25 120.2 241 44.0
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 5.8e-25 119.0 229 36.2
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 7.6e-25 118.6 263 36.5
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 1.0e-24 118.2 207 48.3
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 1.0e-24 118.2 234 35.5
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 2.2e-24 117.1 173 46.2
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.1e-23 114.8 251 39.4
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.1e-23 114.8 251 39.4
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 1.9e-23 114.0 265 39.6
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.5e-23 113.6 246 38.2
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 2.5e-23 113.6 241 38.2
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 3.2e-23 113.2 237 35.4
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 4.2e-23 112.8 257 43.2
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 5.5e-23 112.5 239 43.1
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 5.5e-23 112.5 245 39.2
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 9.3e-23 111.7 215 41.9
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 2.7e-22 110.2 250 36.0
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.7e-22 110.2 259 39.0
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 4.6e-22 109.4 256 43.8
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 7.9e-22 108.6 247 38.9
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 7.9e-22 108.6 312 39.4
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 7.9e-22 108.6 271 38.4
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 7.9e-22 108.6 291 33.3
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 1.0e-21 108.2 144 43.1
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.3e-21 107.8 245 38.8
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.9e-21 106.3 272 40.1
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 3.9e-21 106.3 236 34.7
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 6.7e-21 105.5 250 35.2
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.1e-20 104.8 250 30.8
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 1.9e-20 104.0 253 37.2
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 2.5e-20 103.6 267 36.7
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 3.3e-20 103.2 247 37.2
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 4.3e-20 102.8 263 38.8
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 7.4e-20 102.1 272 37.9
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 9.7e-20 101.7 266 35.3
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 1.6e-19 100.9 277 40.1
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 2.8e-19 100.1 266 36.5
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.7e-19 99.8 217 34.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 4.8e-19 99.4 234 40.2
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 8.2e-19 98.6 294 31.3
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 8.2e-19 98.6 230 43.0
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.4e-18 97.8 267 30.7
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 4.1e-18 96.3 211 40.3
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.3e-18 95.9 253 37.2
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 5.3e-18 95.9 257 38.9
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 6.9e-18 95.5 137 43.1
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 6.9e-18 95.5 243 31.7
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.2e-17 94.7 155 41.3
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 2.0e-17 94.0 268 31.0
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.6e-17 93.6 153 41.2
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.6e-17 93.6 255 32.9
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 4.5e-17 92.8 216 35.2
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 4.5e-17 92.8 267 36.3
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.5e-17 92.8 177 40.1
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 5.9e-17 92.4 145 46.9
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 5.9e-17 92.4 211 37.0
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 1.0e-16 91.7 257 38.1
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 1.0e-16 91.7 267 29.6
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.7e-16 90.9 164 38.4
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 1.7e-16 90.9 180 37.2
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 2.9e-16 90.1 254 40.6
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 2.9e-16 90.1 267 35.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 3.8e-16 89.7 244 29.5
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.0e-16 89.4 158 45.6
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.5e-16 89.0 154 44.8
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 6.5e-16 89.0 247 32.4
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.1e-15 88.2 155 41.9
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 1.1e-15 88.2 245 31.4
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 1.1e-15 88.2 292 30.8
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 2.5e-15 87.0 210 34.3
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 5.5e-15 85.9 79 53.2
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 7.2e-15 85.5 207 34.3
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 9.4e-15 85.1 189 36.5
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.6e-14 84.3 273 31.9
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 2.1e-14 84.0 256 37.1
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.7e-14 83.6 329 35.9
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.6e-14 82.8 184 33.2
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 4.6e-14 82.8 149 39.6
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 3.9e-13 79.7 244 31.1
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 3.9e-13 79.7 199 37.7
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 1.5e-12 77.8 156 46.8
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.5e-12 77.8 142 51.4
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 5.7e-12 75.9 140 35.7
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 9.7e-12 75.1 112 42.9
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.7e-11 74.3 147 45.6
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.7e-11 74.3 256 33.2
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 2.2e-11 73.9 112 43.8
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.8e-11 73.6 137 35.8
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 2.8e-11 73.6 148 40.5
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 3.7e-11 73.2 156 35.9
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 3.7e-11 73.2 134 36.6
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 3.7e-11 73.2 152 47.4
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 1.1e-10 71.6 145 35.2
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.4e-10 71.2 263 33.5
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.1e-10 70.1 155 32.9
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 3.1e-10 70.1 144 37.5
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 4.1e-10 69.7 153 33.3
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 4.1e-10 69.7 153 47.1
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 5.3e-10 69.3 100 46.0
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 1.5e-09 67.8 121 42.1
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.9e-09 65.9 75 49.3
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 5.9e-09 65.9 158 31.0
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 7.7e-09 65.5 44 65.9
unitig_578.g15702 Utricularia gibba HOM05D004206 ORTHO05D003325 7.7e-09 65.5 48 62.5
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.7e-08 64.3 137 45.3
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 2.9e-08 63.5 168 33.9
HanXRQChr14g0459281 Helianthus annuus HOM05D004206 ORTHO05D003325 3.8e-08 63.2 73 50.7
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 5.0e-08 62.8 100 39.0
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 8.5e-08 62.0 89 42.7
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 8.5e-08 62.0 71 53.5
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 3.2e-07 60.1 69 44.9
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 3.2e-07 60.1 69 44.9
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 3.2e-07 60.1 69 44.9
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 3.2e-07 60.1 210 36.2
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 4.2e-07 59.7 59 54.2
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 4.2e-07 59.7 275 28.0
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 5.5e-07 59.3 96 37.5
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 9.4e-07 58.5 72 48.6
SEGI_11879 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 9.4e-07 58.5 117 39.3
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 1.2e-06 58.2 96 37.5
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 1.6e-06 57.8 68 44.1
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 2.1e-06 57.4 80 43.8
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 2.1e-06 57.4 139 31.7
Migut.M01027 Erythranthe guttata HOM05D004206 ORTHO05D003325 2.1e-06 57.4 61 50.8
A04p28630 Brassica napus HOM05D008508 ORTHO05D003325 2.7e-06 57.0 55 50.9
Hma1.2p1_1004F.1_g246870 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.7e-06 57.0 45 57.8
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 3.6e-06 56.6 56 48.2
Carub.0005s2025 Capsella rubella HOM05D008508 ORTHO05D003325 3.6e-06 56.6 165 31.5
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 3.6e-06 56.6 63 47.6
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 3.6e-06 56.6 54 53.7
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 3.6e-06 56.6 115 34.8
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 3.6e-06 56.6 84 40.5
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.7e-06 56.2 102 36.3
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 4.7e-06 56.2 160 32.5
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 6.1e-06 55.8 85 41.2
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 6.1e-06 55.8 85 41.2
Nn2g12918 Nelumbo nucifera HOM05D004206 ORTHO05D003325 6.1e-06 55.8 138 37.7
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 6.1e-06 55.8 148 35.8
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 7.9e-06 55.5 68 39.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 7.9e-06 55.5 65 49.2


User provided reference genes

Program Settings