Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 6.7e-165 583.9 294 100.0
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 6.2e-163 577.4 294 98.6
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 4.1e-138 495.0 298 87.2
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.1e-127 460.3 311 77.8
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.2e-127 458.4 316 76.9
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.8e-122 443.0 241 90.9
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 3.8e-112 408.7 317 67.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 3.6e-110 402.1 306 70.3
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 8.0e-110 401.0 306 69.3
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.0e-110 401.0 295 69.5
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 5.2e-109 398.3 295 69.5
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 5.7e-108 394.8 303 68.3
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 7.5e-108 394.4 295 68.8
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 7.5e-108 394.4 311 66.6
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 1.3e-107 393.7 292 68.8
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.7e-107 393.3 301 68.1
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 4.9e-107 391.7 292 68.8
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 6.3e-107 391.3 283 67.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 7.0e-106 387.9 294 68.7
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 9.2e-106 387.5 297 67.7
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.3e-104 382.9 303 66.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 5.0e-104 381.7 289 65.7
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 6.6e-104 381.3 224 79.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 8.6e-104 380.9 307 66.8
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.9e-103 379.8 294 69.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.9e-103 379.8 294 69.4
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 1.9e-103 379.8 312 64.7
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.5e-103 379.4 289 67.8
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.5e-103 377.5 294 69.4
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.6e-102 376.7 294 69.0
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 2.1e-102 376.3 300 69.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 6.1e-102 374.8 264 70.8
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 6.1e-102 374.8 318 63.2
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 6.1e-102 374.8 318 63.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 8.0e-102 374.4 289 67.5
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 8.0e-102 374.4 294 66.3
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.4e-101 373.6 290 65.5
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.8e-101 373.2 312 64.1
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.8e-101 373.2 334 62.0
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 4.0e-101 372.1 281 67.6
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.2e-100 370.5 280 66.8
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.5e-100 370.2 301 64.1
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 1.5e-100 370.2 227 77.5
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.5e-100 370.2 310 63.2
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.0e-100 369.8 310 64.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 3.4e-100 369.0 303 65.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 3.4e-100 369.0 299 66.9
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.7e-99 366.7 232 75.0
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.7e-99 366.7 303 64.4
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.9e-99 365.9 239 74.5
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 2.9e-99 365.9 286 65.4
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 3.7e-99 365.5 304 65.1
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.1e-98 364.0 269 68.4
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.1e-98 364.0 314 62.7
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.4e-98 362.8 216 78.2
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 5.4e-98 361.7 234 75.6
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.2e-97 360.5 272 66.9
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.7e-97 359.4 287 65.2
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 4.6e-97 358.6 286 65.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.6e-97 358.6 240 72.5
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 7.8e-97 357.8 296 64.9
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 7.8e-97 357.8 295 65.4
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.3e-96 357.1 296 66.2
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 3.9e-96 355.5 299 64.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 3.9e-96 355.5 287 67.2
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.9e-96 355.5 257 67.3
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.5e-95 353.6 294 62.9
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.5e-95 353.6 294 62.9
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.9e-95 353.2 312 60.3
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 4.3e-95 352.1 227 75.3
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 1.2e-94 350.5 295 64.4
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.2e-94 350.5 291 64.9
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.2e-94 350.5 319 60.2
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.6e-94 350.1 294 64.3
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.6e-94 350.1 292 64.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.1e-94 349.7 305 62.6
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.8e-94 349.4 201 81.6
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.6e-94 349.0 220 74.5
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 4.7e-94 348.6 231 73.2
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 6.8e-93 344.7 227 73.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 8.9e-93 344.4 286 61.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 2.0e-92 343.2 223 72.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 9.8e-92 340.9 296 63.2
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 1.4e-90 337.0 273 62.3
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.3e-88 330.5 217 74.2
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.3e-88 330.5 224 69.6
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 6.6e-88 328.2 283 64.7
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 1.1e-87 327.4 302 57.9
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 2.5e-87 326.2 241 64.7
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.8e-86 322.8 281 61.9
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.1e-77 294.3 220 62.7
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 4.1e-74 282.3 240 62.1
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 3.9e-72 275.8 212 63.2
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.9e-67 259.6 217 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 9.3e-66 254.6 213 57.3
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 2.5e-63 246.5 167 70.1
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.4e-61 240.7 165 70.3
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 4.9e-59 232.3 160 68.8
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 6.4e-59 231.9 210 61.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 3.5e-57 226.1 219 48.9
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.0e-56 224.6 144 75.0
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.3e-56 224.2 222 50.0
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.9e-55 220.3 215 59.5
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.1e-54 216.9 191 53.4
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 6.2e-54 215.3 167 65.3
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.8e-48 197.2 157 65.6
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.6e-46 190.7 134 67.9
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.1e-46 190.3 133 70.7
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-42 177.2 114 73.7
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.2e-35 153.7 95 76.8
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.4e-34 151.0 83 88.0
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.4e-34 151.0 83 88.0
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 3.3e-23 113.2 91 61.5
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.2e-18 96.7 82 56.1
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 4.2e-18 96.3 225 27.1
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 3.8e-11 73.2 62 64.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.5e-10 71.2 124 29.0
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 3.6e-09 66.6 40 70.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.6e-09 66.6 256 21.9
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 6.1e-09 65.9 212 24.1
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.0e-08 65.1 223 21.1
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.4e-08 64.7 223 21.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.8e-08 64.3 224 20.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.3e-08 63.9 170 22.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.0e-08 63.5 170 24.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 4.0e-08 63.2 286 22.4
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 4.0e-08 63.2 48 56.2
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.5e-07 61.2 79 49.4
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.5e-07 61.2 79 49.4
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.6e-07 60.5 235 21.7
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 9.7e-07 58.5 48 60.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.3e-06 58.2 170 21.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.3e-06 58.2 123 25.2
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.7e-06 56.6 207 21.3


User provided reference genes

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