Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 3.3e-128 461.8 253 100.0
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 4.7e-127 458.0 253 98.8
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 6.2e-127 457.6 253 98.8
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.2e-122 443.4 253 94.9
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 1.2e-122 443.4 253 95.3
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 3.6e-119 431.8 241 96.7
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 9.3e-115 417.2 253 87.7
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 2.7e-114 415.6 253 87.7
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 7.9e-114 414.1 253 87.7
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.3e-113 413.3 253 87.4
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.8e-113 412.9 253 86.6
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 1.8e-113 412.9 253 87.0
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 2.3e-113 412.5 253 86.6
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 2.3e-113 412.5 253 87.4
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 3.0e-113 412.1 253 87.0
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 3.0e-113 412.1 253 86.6
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 5.1e-113 411.4 251 86.9
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 6.7e-113 411.0 253 87.0
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 8.7e-113 410.6 253 86.2
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.1e-112 410.2 253 85.4
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 1.9e-112 409.5 253 87.0
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.9e-112 409.5 253 85.0
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 1.9e-112 409.5 253 85.4
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 2.5e-112 409.1 253 85.4
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 2.5e-112 409.1 253 87.0
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 3.3e-112 408.7 253 84.6
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 3.3e-112 408.7 253 86.6
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 7.4e-112 407.5 251 84.9
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 7.4e-112 407.5 253 86.2
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 9.6e-112 407.1 253 84.6
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 9.6e-112 407.1 252 86.1
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 2.1e-111 406.0 253 85.4
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 2.1e-111 406.0 253 85.8
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 2.8e-111 405.6 253 84.6
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 2.8e-111 405.6 253 85.4
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 2.8e-111 405.6 253 85.8
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.7e-111 405.2 253 83.8
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 4.8e-111 404.8 253 84.2
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 6.2e-111 404.4 253 84.2
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 8.1e-111 404.1 251 84.1
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 8.1e-111 404.1 251 84.1
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 8.1e-111 404.1 253 85.4
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 8.1e-111 404.1 253 85.4
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 1.1e-110 403.7 251 84.1
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 1.4e-110 403.3 253 85.8
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 1.8e-110 402.9 253 84.2
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 2.4e-110 402.5 253 84.2
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 3.1e-110 402.1 253 84.2
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 5.3e-110 401.4 250 85.2
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 6.9e-110 401.0 251 83.7
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 6.9e-110 401.0 251 83.7
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 6.9e-110 401.0 266 82.0
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 9.0e-110 400.6 253 85.4
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 1.2e-109 400.2 253 84.2
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 2.0e-109 399.4 253 83.0
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 5.8e-109 397.9 253 83.0
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 7.6e-109 397.5 251 83.3
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 9.9e-109 397.1 253 83.8
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 1.3e-108 396.7 251 83.3
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 1.3e-108 396.7 253 82.6
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 2.9e-108 395.6 253 83.4
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 2.9e-108 395.6 251 83.3
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 3.8e-108 395.2 251 82.9
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 3.8e-108 395.2 251 83.7
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 6.4e-108 394.4 253 83.0
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 8.4e-108 394.0 253 83.4
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 1.4e-107 393.3 251 82.9
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 1.9e-107 392.9 253 82.2
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 1.9e-107 392.9 249 82.7
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 1.9e-107 392.9 249 82.7
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 2.4e-107 392.5 249 81.5
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 3.2e-107 392.1 253 83.4
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 7.1e-107 391.0 251 81.7
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 7.1e-107 391.0 248 83.9
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 7.1e-107 391.0 253 83.0
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 1.6e-106 389.8 253 81.0
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 3.5e-106 388.7 250 82.4
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 3.5e-106 388.7 251 82.5
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 4.6e-106 388.3 253 81.0
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 6.0e-106 387.9 251 81.3
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 7.9e-106 387.5 251 82.1
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 1.3e-105 386.7 253 83.4
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 1.3e-105 386.7 251 82.1
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 1.8e-105 386.3 250 82.0
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 1.8e-105 386.3 251 82.1
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 1.8e-105 386.3 253 81.8
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 3.9e-105 385.2 251 81.3
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 5.1e-105 384.8 251 81.3
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 6.7e-105 384.4 251 81.7
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.1e-104 383.6 253 81.4
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 1.1e-104 383.6 251 80.5
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 4.3e-104 381.7 251 79.7
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 5.6e-104 381.3 251 78.9
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 7.4e-104 380.9 251 80.1
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 7.4e-104 380.9 253 80.6
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 7.4e-104 380.9 253 80.2
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 2.8e-103 379.0 225 88.4
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 3.7e-103 378.6 253 78.3
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 1.4e-102 376.7 275 77.5
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 2.6e-101 372.5 248 78.6
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 4.5e-101 371.7 225 86.7
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 5.8e-101 371.3 250 78.0
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.7e-100 369.8 253 79.1
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 6.5e-100 367.9 274 75.5
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.1e-99 367.1 253 77.1
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 1.8e-97 359.8 253 73.9
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 3.9e-97 358.6 226 84.1
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 7.4e-96 354.4 253 77.1
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 2.4e-94 349.4 251 72.1
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.9e-93 344.7 251 72.9
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.5e-91 338.2 252 69.0
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.5e-91 338.2 251 71.3
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 1.8e-89 333.2 253 69.6
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 1.9e-88 329.7 194 91.2
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 7.7e-85 317.8 187 89.8
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 5.0e-84 315.1 252 67.9
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 3.2e-67 259.2 253 64.0
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.8e-65 253.4 179 73.2
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-65 252.7 247 55.5
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 1.2e-61 240.7 152 84.2
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.9e-59 233.4 149 81.9
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.6e-58 229.2 154 81.8
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 1.5e-51 207.2 245 42.4
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 4.9e-47 192.2 253 50.6
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 4.1e-46 189.1 241 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 3.7e-39 166.0 233 42.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.0e-36 156.4 98 79.6
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 8.9e-33 144.8 96 79.2
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 6.4e-31 138.7 119 63.9
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.1e-30 137.9 77 94.8
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.9e-30 137.1 239 34.7
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 5.0e-28 129.0 75 90.7
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 1.7e-23 114.0 234 35.0
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 7.1e-22 108.6 101 66.3
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 9.6e-11 71.6 51 74.5


User provided reference genes

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