Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 9.4e-150 533.5 268 100.0
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 6.7e-148 527.3 268 98.5
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 7.0e-145 517.3 268 96.3
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.9e-143 511.9 268 95.5
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.6e-128 463.0 272 87.9
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.4e-121 439.9 262 83.6
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.2e-115 420.2 240 86.7
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 3.3e-102 375.6 261 74.3
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 3.8e-98 362.1 264 69.3
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.5e-96 355.5 274 67.9
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.8e-91 338.2 234 72.6
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 4.2e-89 332.0 266 65.0
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 4.2e-89 332.0 270 64.1
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 4.2e-89 332.0 275 64.7
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 3.9e-87 325.5 267 67.0
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.1e-86 323.9 265 63.8
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 1.1e-86 323.9 269 63.6
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.5e-86 323.6 264 62.9
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 3.6e-85 318.9 266 63.2
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 3.6e-85 318.9 259 65.3
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 2.2e-82 309.7 266 63.5
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 3.2e-81 305.8 238 66.4
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 4.2e-81 305.4 259 62.9
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 4.2e-81 305.4 270 61.1
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 5.4e-81 305.1 235 68.9
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 3.5e-80 302.4 273 59.3
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 7.9e-80 301.2 239 66.1
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 3.0e-79 299.3 272 62.5
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 6.7e-79 298.1 258 63.6
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.9e-78 296.6 239 65.7
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.3e-77 293.9 229 67.2
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.1e-77 293.1 276 59.8
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.1e-77 293.1 268 60.1
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 3.7e-77 292.4 268 59.7
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 3.7e-77 292.4 272 61.4
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 4.8e-77 292.0 273 59.7
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 3.1e-76 289.3 234 65.4
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.4e-75 285.8 229 65.5
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 5.8e-75 285.0 270 57.0
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-74 283.5 268 58.6
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-74 283.5 268 58.6
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 2.9e-74 282.7 242 60.3
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 4.9e-74 282.0 284 58.8
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 8.4e-74 281.2 238 64.7
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.4e-73 280.4 260 58.8
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.9e-73 280.0 269 57.2
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 3.2e-73 279.3 222 66.2
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 7.1e-73 278.1 211 68.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.1e-72 276.6 269 58.7
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.0e-71 274.2 266 58.3
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.3e-71 273.9 261 59.8
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.3e-71 273.1 220 62.7
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 5.1e-71 271.9 229 63.3
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.1e-70 270.8 270 57.4
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.5e-70 269.6 258 58.9
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 2.5e-70 269.6 258 59.3
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.3e-70 269.2 219 63.9
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.8e-69 266.2 207 66.2
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 6.2e-69 265.0 220 63.6
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.0e-66 257.7 222 62.6
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.7e-66 256.9 253 57.3
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 1.7e-66 256.9 253 56.5
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 6.5e-66 255.0 257 58.0
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.1e-65 254.2 269 54.3
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 2.5e-65 253.1 259 57.5
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 3.2e-65 252.7 269 53.9
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 4.2e-65 252.3 219 60.7
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 6.0e-64 248.4 242 57.9
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 6.0e-64 248.4 256 54.3
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 7.9e-64 248.1 254 56.3
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 1.0e-63 247.7 231 59.3
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-63 246.5 256 55.5
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-63 246.5 256 55.5
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 3.9e-63 245.7 214 61.2
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.1e-63 245.4 224 58.9
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 6.3e-61 238.4 269 52.4
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.8e-60 236.9 256 53.9
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 6.9e-60 235.0 256 53.9
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 9.0e-60 234.6 240 55.8
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.2e-59 234.2 219 61.6
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.5e-59 233.8 231 57.6
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 3.4e-59 232.6 218 57.8
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 4.5e-59 232.3 228 58.8
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 5.9e-59 231.9 173 69.4
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.8e-58 229.2 239 55.2
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 6.5e-58 228.4 248 55.2
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.1e-52 211.1 206 56.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.1e-52 211.1 206 56.8
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 1.4e-52 210.7 228 53.1
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 3.1e-52 209.5 207 54.6
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 4.1e-52 209.1 206 56.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 4.1e-52 209.1 206 56.8
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 6.9e-52 208.4 238 50.8
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 1.5e-51 207.2 359 40.7
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.7e-51 204.9 227 54.6
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.8e-50 202.6 190 58.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 8.5e-50 201.4 250 49.6
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 3.2e-49 199.5 236 52.1
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 1.2e-48 197.6 253 47.4
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 4.7e-48 195.7 236 50.4
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.0e-47 194.5 261 47.9
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 1.1e-46 191.0 222 52.3
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.1e-46 191.0 197 56.3
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 1.1e-46 191.0 221 50.7
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 2.0e-46 190.3 219 53.0
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 4.4e-46 189.1 257 47.5
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.2e-45 186.8 257 47.1
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 3.1e-44 183.0 118 77.1
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.0e-42 177.9 172 58.1
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.9e-41 173.7 239 43.9
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 4.7e-40 169.1 224 48.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 5.2e-39 165.6 160 57.5
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.5e-38 164.1 98 83.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 3.6e-32 142.9 157 50.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 8.0e-32 141.7 97 74.2
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 2.7e-27 126.7 184 43.5
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 5.9e-27 125.6 177 44.1
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 1.0e-26 124.8 116 55.2
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 2.5e-25 120.2 122 55.7
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 3.2e-25 119.8 70 85.7
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.2e-24 117.9 73 79.5
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.1e-24 117.1 158 46.8
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 4.4e-22 109.4 212 38.2
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 9.8e-22 108.2 75 72.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 2.8e-21 106.7 212 36.8
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 6.3e-21 105.5 68 77.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.3e-18 97.8 234 34.6
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.5e-17 93.6 63 76.2
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.8e-15 87.4 48 93.8
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-10 68.9 91 41.8
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.5e-09 67.8 70 52.9
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 1.5e-09 67.8 104 41.3
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.5e-06 57.8 93 43.0


User provided reference genes

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