Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033940 Solanum pennellii HOM05D002678 ORTHO05D002920 2.8e-61 238.4 120 100.0
Solyc10g084510.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 4.5e-59 231.1 118 98.3
PGSC0003DMG400011054 Solanum tuberosum HOM05D002678 ORTHO05D002920 7.9e-56 220.3 118 95.8
Oeu035168.1 Olea europaea HOM05D002678 ORTHO05D002920 6.1e-24 114.4 120 55.0
Migut.L01639 Erythranthe guttata HOM05D002678 ORTHO05D002920 8.8e-23 110.5 120 56.7
Rhsim05G0185100 Rhododendron simsii HOM05D002678 ORTHO05D002920 8.8e-23 110.5 116 55.2
Cc06_g03230 Coffea canephora HOM05D002678 ORTHO05D002920 1.5e-22 109.8 125 55.2
Sabra16G0089400 Salix brachista HOM05D002678 ORTHO05D002920 1.7e-21 106.3 97 61.9
Dinv35670 Davidia involucrata HOM05D002678 ORTHO05D002920 2.2e-21 105.9 118 55.9
Potri.016G081600 Populus trichocarpa HOM05D002678 ORTHO05D002920 2.2e-21 105.9 93 61.3
Manes.08G073300 Manihot esculenta HOM05D002678 ORTHO05D002920 2.8e-21 105.5 95 58.9
AUR62001571 Chenopodium quinoa HOM05D002678 ORTHO05D002920 4.8e-21 104.8 93 55.9
Nn2g10547 Nelumbo nucifera HOM05D002678 ORTHO05D002920 4.8e-21 104.8 101 57.4
TAR636G3383 Trochodendron aralioides HOM05D002678 ORTHO05D002920 1.1e-20 103.6 93 60.2
TAR623G1692 Trochodendron aralioides HOM05D002678 ORTHO05D002920 1.4e-20 103.2 115 53.0
Hma1.2p1_0746F.1_g212310 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 4.1e-20 101.7 106 57.5
Prupe.6G246400 Prunus persica HOM05D002678 ORTHO05D002920 4.1e-20 101.7 117 52.1
SalBow3G2888 Salvia bowleyana HOM05D002678 ORTHO05D002920 4.1e-20 101.7 115 57.4
Hma1.2p1_0035F.1_g021820 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 5.3e-20 101.3 114 50.0
Potri.006G215000 Populus trichocarpa HOM05D002678 ORTHO05D002920 5.3e-20 101.3 95 57.9
Nn2g12832 Nelumbo nucifera HOM05D002678 ORTHO05D002920 9.1e-20 100.5 117 51.3
MD12G1132300 Malus domestica HOM05D002678 ORTHO05D002920 1.2e-19 100.1 128 47.7
AUR62020213 Chenopodium quinoa HOM05D002678 ORTHO05D002920 4.5e-19 98.2 93 54.8
Lalb_Chr02g0153371 Lupinus albus HOM05D002678 ORTHO05D002920 1.0e-18 97.1 103 52.4
ATR0759G110 Amborella trichopoda HOM05D002678 ORTHO05D002920 1.3e-18 96.7 99 55.6
Haze_20701 Corylus avellana HOM05D002678 ORTHO05D002920 1.3e-18 96.7 117 47.9
Eucgr.L00360 Eucalyptus grandis HOM05D002678 ORTHO05D002920 2.2e-18 95.9 110 48.2
Rhsim13G0088900 Rhododendron simsii HOM05D002678 ORTHO05D002920 2.2e-18 95.9 120 49.2
CiPaw.09G186200 Carya illinoinensis HOM05D002678 ORTHO05D002920 2.9e-18 95.5 115 49.6
COL.COLO4_07093 Corchorus olitorius HOM05D002678 ORTHO05D002920 3.8e-18 95.1 117 49.6
TWI75G0718 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 5.0e-18 94.7 121 52.1
VMungo0720G1849 Vigna mungo HOM05D002678 ORTHO05D002920 5.0e-18 94.7 114 50.9
RcHm_v2.0_Chr3g0467961 Rosa chinensis HOM05D002678 ORTHO05D002920 6.5e-18 94.4 97 48.5
CSS0019295 Camellia sinensis var. sinensis HOM05D002678 ORTHO05D002920 1.1e-17 93.6 120 48.3
MD04G1116500 Malus domestica HOM05D002678 ORTHO05D002920 1.5e-17 93.2 104 49.0
Aqoxy4G03090 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 1.9e-17 92.8 96 52.1
Phvul.007G160800 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 2.5e-17 92.4 100 55.0
Cfa017459 Carpinus fangiana HOM05D002678 ORTHO05D002920 3.2e-17 92.0 93 53.8
Manes.04G028900 Manihot esculenta HOM05D002678 ORTHO05D002920 3.2e-17 92.0 96 52.1
EL10Ac7g16278 Beta vulgaris HOM05D002678 ORTHO05D002920 4.2e-17 91.7 97 53.6
FvH4_6g14750 Fragaria vesca HOM05D002678 ORTHO05D002920 4.2e-17 91.7 98 51.0
FAN14G4174 Fragaria x ananassa HOM05D002678 ORTHO05D002920 4.2e-17 91.7 98 51.0
Manes.11G136900 Manihot esculenta HOM05D002678 ORTHO05D002920 4.2e-17 91.7 135 43.7
Ca_11435_v3 Cicer arietinum L. HOM05D002678 ORTHO05D002920 7.2e-17 90.9 119 47.9
Duzib106G2004 Durio zibethinus HOM05D002678 ORTHO05D002920 7.2e-17 90.9 116 51.7
FAN02G3512 Fragaria x ananassa HOM05D002678 ORTHO05D002920 7.2e-17 90.9 98 51.0
DCAR_018868 Daucus carota HOM05D002678 ORTHO05D002920 9.4e-17 90.5 92 52.2
Gorai.002G253000 Gossypium raimondii HOM05D002678 ORTHO05D002920 1.6e-16 89.7 97 54.6
FAN09G4043 Fragaria x ananassa HOM05D002678 ORTHO05D002920 2.1e-16 89.4 98 50.0
Glyma.13G134700 Glycine max HOM05D002678 ORTHO05D002920 2.1e-16 89.4 114 47.4
Gohir.A01G218900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.1e-16 89.4 97 53.6
Duzib150G0336 Durio zibethinus HOM05D002678 ORTHO05D002920 2.7e-16 89.0 117 47.9
Glyma.10G046800 Glycine max HOM05D002678 ORTHO05D002920 2.7e-16 89.0 114 49.1
FAN05G1053 Fragaria x ananassa HOM05D002678 ORTHO05D002920 8.0e-16 87.4 101 47.5
MBI14_g21098_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 8.0e-16 87.4 93 52.7
Thecc.05G048400 Theobroma cacao HOM05D002678 ORTHO05D002920 8.0e-16 87.4 115 46.1
arahy.Tifrunner.gnm1.ann1.2B715G Arachis hypogaea HOM05D002678 ORTHO05D002920 1.0e-15 87.0 99 52.5
Gohir.D01G207900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.0e-15 87.0 97 53.6
Psat6g069440 Pisum sativum HOM05D002678 ORTHO05D002920 1.0e-15 87.0 123 43.9
arahy.Tifrunner.gnm1.ann1.FZ8WY7 Arachis hypogaea HOM05D002678 ORTHO05D002920 1.4e-15 86.7 99 52.5
Actinidia37266 Actinidia chinensis HOM05D002678 ORTHO05D002920 2.3e-15 85.9 108 50.9
Gohir.A09G160000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.3e-15 85.9 119 47.9
Gorai.006G177000 Gossypium raimondii HOM05D002678 ORTHO05D002920 3.0e-15 85.5 119 47.9
DCAR_017751 Daucus carota HOM05D002678 ORTHO05D002920 4.0e-15 85.1 103 52.4
DCAR_014949 Daucus carota HOM05D002678 ORTHO05D002920 5.2e-15 84.7 106 46.2
QL01p034494 Quercus lobata HOM05D002678 ORTHO05D002920 5.2e-15 84.7 119 49.6
TPR.G10526 Trifolium pratense HOM05D002678 ORTHO05D002920 5.2e-15 84.7 118 42.4
vmacro03134 Vaccinium macrocarpon HOM05D002678 ORTHO05D002920 5.2e-15 84.7 116 46.6
Lj5g0022817 Lotus japonicus HOM05D002678 ORTHO05D002920 6.8e-15 84.3 94 50.0
Duzib093G0125 Durio zibethinus HOM05D002678 ORTHO05D002920 1.2e-14 83.6 103 51.5
Gohir.D09G155600 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.2e-14 83.6 113 47.8
Aqoxy2G01947 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 1.5e-14 83.2 98 50.0
MBI05_g32634_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 1.5e-14 83.2 93 49.5
TPR.G35579 Trifolium pratense HOM05D002678 ORTHO05D002920 2.6e-14 82.4 106 50.0
DCAR_015584 Daucus carota HOM05D002678 ORTHO05D002920 3.4e-14 82.0 100 49.0
Lj1g0018959 Lotus japonicus HOM05D002678 ORTHO05D002920 4.4e-14 81.6 101 48.5
Gorai.001G106900 Gossypium raimondii HOM05D002678 ORTHO05D002920 7.5e-14 80.9 100 48.0
SEGI_24546 Sequoiadendron giganteum HOM05D002678 ORTHO05D002920 9.8e-14 80.5 98 45.9
Dinv06291 Davidia involucrata HOM05D002678 ORTHO05D002920 1.3e-13 80.1 82 56.1
QL07p046064 Quercus lobata HOM05D002678 ORTHO05D002920 1.3e-13 80.1 119 43.7
Gohir.D07G099200 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.7e-13 79.7 100 47.0
Medtr1g067350 Medicago truncatula HOM05D002678 ORTHO05D002920 1.7e-13 79.7 95 49.5
Oeu058517.1 Olea europaea HOM05D002678 ORTHO05D002920 2.8e-13 79.0 119 44.5
Sabra06G0166000 Salix brachista HOM05D002678 ORTHO05D002920 2.8e-13 79.0 89 49.4
CsaV3_6G022030 Cucumis sativus L. HOM05D002678 ORTHO05D002920 3.7e-13 78.6 105 48.6
Lsat_1_v5_gn_5_167180 Lactuca sativa HOM05D002678 ORTHO05D002920 3.7e-13 78.6 104 45.2
Thecc.09G330900 Theobroma cacao HOM05D002678 ORTHO05D002920 3.7e-13 78.6 116 43.1
HanXRQChr04g0110311 Helianthus annuus HOM05D002678 ORTHO05D002920 4.8e-13 78.2 105 47.6
CANSAT80G0424 Cannabis sativa HOM05D002678 ORTHO05D002920 6.3e-13 77.8 120 42.5
Medtr7g100340 Medicago truncatula HOM05D002678 ORTHO05D002920 1.4e-12 76.6 108 45.4
ECA248G3075 Erigeron canadensis HOM05D002678 ORTHO05D002920 1.8e-12 76.3 104 45.2
Gohir.A04G078100 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.1e-12 75.5 101 48.5
Gohir.A08G000129 Gossypium hirsutum HOM05D002678 ORTHO05D002920 4.1e-12 75.1 104 46.2
Gorai.004G003100 Gossypium raimondii HOM05D002678 ORTHO05D002920 4.1e-12 75.1 104 46.2
EL10Ac7g15949 Beta vulgaris HOM05D002678 ORTHO05D002920 5.4e-12 74.7 99 45.5
Gohir.D04G117300 Gossypium hirsutum HOM05D002678 ORTHO05D002920 5.4e-12 74.7 99 49.5
TWI79G0420 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 7.0e-12 74.3 102 49.0
Duzib128G1720 Durio zibethinus HOM05D002678 ORTHO05D002920 9.1e-12 73.9 116 44.8
Gorai.009G422300 Gossypium raimondii HOM05D002678 ORTHO05D002920 9.1e-12 73.9 99 48.5
Os05g0120300 Oryza sativa ssp. japonica HOM05D002678 ORTHO05D002920 9.1e-12 73.9 129 40.3
Oeu040266.1 Olea europaea HOM05D002678 ORTHO05D002920 1.2e-11 73.6 106 47.2
Glyma.03G175100 Glycine max HOM05D002678 ORTHO05D002920 2.0e-11 72.8 101 41.6
Sc01g0003810 Simmondsia chinensis HOM05D002678 ORTHO05D002920 2.0e-11 72.8 138 36.2
COL.COLO4_18420 Corchorus olitorius HOM05D002678 ORTHO05D002920 2.7e-11 72.4 117 39.3
Gohir.D08G009900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.7e-11 72.4 104 45.2
Nitab4.5_0000182g0070 Nicotiana tabacum HOM05D002678 ORTHO05D002920 2.7e-11 72.4 104 44.2
MELO3C025706.2 Cucumis melo HOM05D002678 ORTHO05D002920 3.5e-11 72.0 107 44.9
Lj1C177T9 Lonicera japonica HOM05D002678 ORTHO05D002920 3.5e-11 72.0 70 57.1
Cpa.g.sc3922.1 Carica papaya HOM05D002678 ORTHO05D002920 4.5e-11 71.6 44 77.3
Ciclev10030290m.g Citrus clementina HOM05D002678 ORTHO05D002920 4.5e-11 71.6 114 44.7
ClCG10G020770 Citrullus lanatus HOM05D002678 ORTHO05D002920 5.9e-11 71.2 98 40.8
Sed0026303 Sechium edule HOM05D002678 ORTHO05D002920 7.7e-11 70.9 92 46.7
HPP92_006589 Vanilla planifolia HOM05D002678 ORTHO05D002920 7.7e-11 70.9 90 48.9
ClCG02G020590 Citrullus lanatus HOM05D002678 ORTHO05D002920 1.0e-10 70.5 110 42.7
MELO3C009291.2 Cucumis melo HOM05D002678 ORTHO05D002920 1.0e-10 70.5 110 43.6
Duzib168G1913 Durio zibethinus HOM05D002678 ORTHO05D002920 1.0e-10 70.5 119 39.5
Duzib170G1033 Durio zibethinus HOM05D002678 ORTHO05D002920 1.0e-10 70.5 116 44.8
Gohir.D03G131000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.0e-10 70.5 120 42.5
HanXRQChr14g0429171 Helianthus annuus HOM05D002678 ORTHO05D002920 1.0e-10 70.5 109 40.4
PGR004G2814 Punica granatum HOM05D002678 ORTHO05D002920 1.0e-10 70.5 98 45.9
PSO339G4561 Papaver somniferum HOM05D002678 ORTHO05D002920 1.3e-10 70.1 108 41.7
PSO384G0436 Papaver somniferum HOM05D002678 ORTHO05D002920 1.3e-10 70.1 108 41.7
Atru.chr3.3786 Acer truncatum HOM05D002678 ORTHO05D002920 1.7e-10 69.7 105 47.6
Gohir.A03G037400 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.3e-10 69.3 120 42.5
Cpa.g.sc139.1 Carica papaya HOM05D002678 ORTHO05D002920 2.9e-10 68.9 107 43.9
Nitab4.5_0007030g0030 Nicotiana tabacum HOM05D002678 ORTHO05D002920 3.8e-10 68.6 100 46.0
A03p00870 Brassica napus HOM05D002678 ORTHO05D002920 5.0e-10 68.2 102 43.1
Glyma.19G175800 Glycine max HOM05D002678 ORTHO05D002920 5.0e-10 68.2 104 42.3
Sopen06g031980 Solanum pennellii HOM05D002678 ORTHO05D002920 5.0e-10 68.2 117 42.7
VMungo1383G3255 Vigna mungo HOM05D002678 ORTHO05D002920 5.0e-10 68.2 96 44.8
Lsat_1_v5_gn_6_26380 Lactuca sativa HOM05D002678 ORTHO05D002920 6.6e-10 67.8 111 46.8
Phvul.001G172100 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 6.6e-10 67.8 98 44.9
SEGI_03855 Sequoiadendron giganteum HOM05D002678 ORTHO05D002920 6.6e-10 67.8 119 39.5
Nitab4.5_0000270g0250 Nicotiana tabacum HOM05D002678 ORTHO05D002920 8.6e-10 67.4 132 40.2
Solyc11g072890.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 8.6e-10 67.4 123 40.7
Sed0001325 Sechium edule HOM05D002678 ORTHO05D002920 1.1e-09 67.0 96 45.8
Migut.N02647 Erythranthe guttata HOM05D002678 ORTHO05D002920 1.9e-09 66.2 99 46.5
AUR62009642 Chenopodium quinoa HOM05D002678 ORTHO05D002920 2.5e-09 65.9 103 42.7
Gorai.003G137800 Gossypium raimondii HOM05D002678 ORTHO05D002920 2.5e-09 65.9 120 40.8
AUR62001849 Chenopodium quinoa HOM05D002678 ORTHO05D002920 3.3e-09 65.5 103 42.7
Eucgr.A01213 Eucalyptus grandis HOM05D002678 ORTHO05D002920 3.3e-09 65.5 95 42.1
Eucgr.K03179 Eucalyptus grandis HOM05D002678 ORTHO05D002920 3.3e-09 65.5 93 45.2
C03p01120 Brassica napus HOM05D002678 ORTHO05D002920 4.2e-09 65.1 103 43.7
BolC3t12671H Brassica oleracea HOM05D002678 ORTHO05D002920 4.2e-09 65.1 103 43.7
Cc01_g12070 Coffea canephora HOM05D002678 ORTHO05D002920 7.2e-09 64.3 107 41.1
SGA_v2.0_scaffold94G28644 Striga asiatica HOM05D002678 ORTHO05D002920 7.2e-09 64.3 135 40.0
Ciclev10012982m.g Citrus clementina HOM05D002678 ORTHO05D002920 9.5e-09 63.9 105 41.9
Sopen11g030550 Solanum pennellii HOM05D002678 ORTHO05D002920 9.5e-09 63.9 100 42.0
PGSC0003DMG400030480 Solanum tuberosum HOM05D002678 ORTHO05D002920 9.5e-09 63.9 99 44.4
Zm00001eb265860 Zea mays HOM05D002678 ORTHO05D002920 9.5e-09 63.9 139 36.0
Carub.0006s0146 Capsella rubella HOM05D002678 ORTHO05D002920 1.2e-08 63.5 107 42.1
HPP92_012460 Vanilla planifolia HOM05D002678 ORTHO05D002920 2.1e-08 62.8 123 38.2
PGR004G2176 Punica granatum HOM05D002678 ORTHO05D002920 2.8e-08 62.4 122 36.9
Ah.08g214950 Amaranthus hybridus HOM05D002678 ORTHO05D002920 3.6e-08 62.0 110 39.1
Lalb_Chr25g0289391 Lupinus albus HOM05D002678 ORTHO05D002920 3.6e-08 62.0 102 37.3
CiPaw.13G102100 Carya illinoinensis HOM05D002678 ORTHO05D002920 4.7e-08 61.6 122 41.0
Nitab4.5_0000040g0520 Nicotiana tabacum HOM05D002678 ORTHO05D002920 1.4e-07 60.1 92 41.3
PGSC0003DMG400015526 Solanum tuberosum HOM05D002678 ORTHO05D002920 1.4e-07 60.1 113 38.9
SalBow3G1187 Salvia bowleyana HOM05D002678 ORTHO05D002920 1.8e-07 59.7 95 42.1
Ah.15g096380 Amaranthus hybridus HOM05D002678 ORTHO05D002920 2.3e-07 59.3 97 39.2
Prupe.4G261600 Prunus persica HOM05D002678 ORTHO05D002920 3.0e-07 58.9 72 43.1
AT5G02640 Arabidopsis thaliana HOM05D002678 ORTHO05D002920 6.8e-07 57.8 107 37.4
arahy.Tifrunner.gnm1.ann1.X1SQMY Arachis hypogaea HOM05D002678 ORTHO05D002920 1.2e-06 57.0 97 40.2
Psat3g048080 Pisum sativum HOM05D002678 ORTHO05D002920 1.5e-06 56.6 91 41.8
CANSAT54G2673 Cannabis sativa HOM05D002678 ORTHO05D002920 2.0e-06 56.2 70 54.3
Thhalv10014890m.g Eutrema salsugineum HOM05D002678 ORTHO05D002920 2.0e-06 56.2 109 39.4
PGR102G2182 Punica granatum HOM05D002678 ORTHO05D002920 2.0e-06 56.2 92 39.1
THA.LOC104826999 Tarenaya hassleriana HOM05D002678 ORTHO05D002920 2.0e-06 56.2 112 38.4
TWI74G0388 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 2.6e-06 55.8 104 42.3
BcaB01g06197 Brassica carinata HOM05D002678 ORTHO05D002920 7.5e-06 54.3 108 40.7
unitig_27.g25073 Utricularia gibba HOM05D002678 ORTHO05D002920 7.5e-06 54.3 102 43.1


User provided reference genes

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