Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 3.4e-112 408.3 202 100.0
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 4.7e-109 397.9 202 97.5
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 6.5e-103 377.5 200 93.5
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.0e-100 370.2 205 90.2
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 1.8e-84 316.2 173 90.8
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 1.8e-84 316.2 173 90.8
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 4.4e-83 311.6 314 56.7
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 1.7e-82 309.7 205 75.6
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 7.7e-80 300.8 200 75.0
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 7.8e-72 274.2 174 76.4
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 4.1e-57 225.3 171 64.3
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.3e-55 220.3 171 63.7
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 6.6e-55 218.0 171 60.8
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 4.0e-52 208.8 168 60.1
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 60.1
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 6.8e-52 208.0 173 59.5
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 59.5
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 59.5
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 60.1
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 60.1
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 8.9e-52 207.6 182 56.6
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 59.5
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.2e-51 207.2 182 56.6
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 2.0e-51 206.5 168 59.5
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 2.0e-51 206.5 168 58.9
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 2.6e-51 206.1 168 58.9
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 2.6e-51 206.1 168 58.9
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 3.4e-51 205.7 168 58.9
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 4.4e-51 205.3 168 58.9
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 4.4e-51 205.3 168 59.5
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.9
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.9
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.9
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.3
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 57.7
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 9.9e-51 204.1 182 54.4
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.3
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.3
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.3
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 9.9e-51 204.1 199 54.3
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.9
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 9.9e-51 204.1 168 58.9
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 58.3
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 58.3
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.3e-50 203.8 181 55.8
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.3e-50 203.8 182 54.9
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 1.3e-50 203.8 182 55.5
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 58.3
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 57.7
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 59.5
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 58.9
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 58.3
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 58.3
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 58.9
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 58.9
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 2.2e-50 203.0 182 54.9
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 58.3
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 2.2e-50 203.0 182 54.9
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 2.2e-50 203.0 182 54.4
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 2.9e-50 202.6 168 58.9
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 2.9e-50 202.6 168 57.7
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 3.7e-50 202.2 168 57.7
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 3.7e-50 202.2 182 56.0
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.7e-50 202.2 168 57.7
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 4.9e-50 201.8 168 57.1
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.9e-50 201.8 168 57.7
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 58.9
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 58.9
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 57.1
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 57.1
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 57.1
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 57.1
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 6.4e-50 201.4 168 57.1
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 8.3e-50 201.1 168 57.1
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 8.3e-50 201.1 168 57.1
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 8.3e-50 201.1 168 58.9
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.1e-49 200.7 168 57.7
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.1e-49 200.7 168 57.7
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 57.7
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 58.3
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 57.1
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 57.1
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 56.5
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 57.7
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 57.1
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 57.1
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 57.1
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 57.1
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 2.4e-49 199.5 182 53.8
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 3.2e-49 199.1 182 53.8
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 57.1
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 57.1
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 56.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 7.1e-49 198.0 183 54.1
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 9.2e-49 197.6 168 57.7
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 9.2e-49 197.6 168 57.1
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 1.2e-48 197.2 168 56.0
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.6e-48 196.8 168 56.0
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 1.6e-48 196.8 168 56.0
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 2.1e-48 196.4 168 56.0
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.7e-48 196.1 170 56.5
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 2.7e-48 196.1 163 57.1
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 3.5e-48 195.7 168 56.5
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 3.5e-48 195.7 168 56.5
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 4.6e-48 195.3 168 55.4
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 6.0e-48 194.9 175 55.4
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 6.0e-48 194.9 168 57.1
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 6.0e-48 194.9 168 56.0
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 7.8e-48 194.5 168 54.8
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 1.7e-47 193.4 168 56.5
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 3.0e-47 192.6 168 56.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 3.9e-47 192.2 168 56.0
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 3.9e-47 192.2 168 54.8
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 6.6e-47 191.4 192 51.0
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 1.5e-46 190.3 168 55.4
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 1.9e-46 189.9 168 55.4
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 1.9e-46 189.9 168 55.4
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 1.9e-46 189.9 168 55.4
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 1.9e-46 189.9 169 54.4
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 1.9e-46 189.9 175 54.3
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 7.3e-46 188.0 168 54.8
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.2e-45 187.2 164 56.1
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.6e-45 186.8 149 58.4
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 2.1e-45 186.4 175 53.1
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 6.2e-45 184.9 173 53.2
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.8e-44 183.3 152 56.6
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.8e-44 183.3 152 56.6
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 1.8e-44 183.3 162 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 2.4e-44 183.0 168 52.4
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 2.4e-44 183.0 169 56.2
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 3.1e-44 182.6 170 51.8
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 3.1e-44 182.6 181 50.8
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.2e-43 180.6 177 52.5
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 4.4e-43 178.7 168 54.8
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 2.2e-42 176.4 168 53.6
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 6.4e-42 174.9 169 51.5
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 3.2e-41 172.6 173 50.9
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 3.2e-41 172.6 173 50.9
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 7.1e-41 171.4 173 50.9
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 9.3e-41 171.0 156 54.5
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 1.2e-40 170.6 182 52.7
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.5e-40 169.1 130 59.2
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 4.3e-38 162.2 156 52.6
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 3.1e-36 156.0 155 49.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.5e-35 153.7 155 49.0
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.2e-32 144.1 132 54.5
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 7.8e-32 141.4 97 64.9
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 1.0e-31 141.0 147 50.3
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.0e-31 139.4 168 45.2
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 9.6e-30 134.4 114 59.6
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.8e-28 130.2 155 45.8
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 3.1e-28 129.4 116 56.9
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 3.1e-20 102.8 71 62.0
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 6.5e-18 95.1 139 41.7
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.9e-16 88.2 139 39.6
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.3e-15 87.4 108 42.6
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 5.1e-15 85.5 153 33.3
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.1e-12 76.3 66 50.0
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 2.6e-11 73.2 168 29.8


User provided reference genes

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