Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 4.4e-115 417.9 205 100.0
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 3.1e-108 395.2 200 96.0
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 4.6e-96 354.8 184 92.9
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.7e-95 352.8 205 83.4
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 8.7e-87 323.9 314 58.0
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 5.3e-84 314.7 205 75.6
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 9.0e-84 313.9 205 75.6
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 1.8e-79 299.7 203 73.9
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 4.8e-69 265.0 176 75.0
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 4.8e-69 265.0 176 75.0
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.5e-59 233.4 171 66.1
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 4.5e-59 231.9 171 65.5
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 1.4e-57 226.9 171 63.2
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 1.6e-56 223.4 168 63.1
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 4.6e-56 221.9 168 61.9
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.6e-56 221.9 174 61.5
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 6.1e-56 221.5 178 60.1
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 6.1e-56 221.5 168 61.9
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 6.1e-56 221.5 168 61.9
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 7.9e-56 221.1 168 61.9
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 7.9e-56 221.1 168 61.9
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 7.9e-56 221.1 174 61.5
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 1.0e-55 220.7 168 61.9
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.0e-55 220.7 168 61.9
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 1.3e-55 220.3 173 61.3
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.3
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.3e-55 220.3 168 61.9
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 1.8e-55 219.9 173 59.5
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.8e-55 219.9 168 61.3
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 1.8e-55 219.9 168 61.9
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.8e-55 219.9 168 60.7
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 60.7
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 60.7
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 61.9
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 61.3
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 61.3
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 2.3e-55 219.5 178 59.6
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 61.3
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 2.3e-55 219.5 168 61.3
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.9
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 60.1
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.3
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.3
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.9
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.9
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 3.0e-55 219.2 168 61.9
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 3.0e-55 219.2 174 60.9
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 3.9e-55 218.8 174 61.5
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 60.7
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 60.7
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.9e-55 218.8 168 61.3
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 61.3
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 60.7
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 61.3
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 61.3
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 61.9
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 5.1e-55 218.4 174 59.8
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 61.3
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 5.1e-55 218.4 168 60.7
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.7e-55 218.0 168 60.7
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 6.7e-55 218.0 178 60.1
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 8.7e-55 217.6 168 60.7
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 8.7e-55 217.6 168 60.1
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 8.7e-55 217.6 168 61.3
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 8.7e-55 217.6 174 60.3
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.1e-54 217.2 168 60.7
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.1e-54 217.2 168 60.7
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.5e-54 216.9 168 60.1
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 1.9e-54 216.5 168 60.7
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.9e-54 216.5 176 60.2
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 1.9e-54 216.5 168 60.1
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 1.9e-54 216.5 168 59.5
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 61.9
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 60.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 60.7
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 2.5e-54 216.1 168 61.3
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.5e-54 216.1 174 59.8
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.1
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 61.9
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 3.3e-54 215.7 178 59.6
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.7
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.1
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.7
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 3.3e-54 215.7 168 60.1
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.1
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.1
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.1
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.1
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 5.7e-54 214.9 168 60.7
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 7.4e-54 214.5 168 61.3
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 9.7e-54 214.2 173 59.0
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.6e-53 213.4 168 59.5
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 59.5
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 59.5
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 2.2e-53 213.0 168 59.5
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 57.7
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 173 58.4
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.8e-53 212.6 173 58.4
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 60.1
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 3.7e-53 212.2 168 61.3
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 3.7e-53 212.2 176 58.0
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 6.3e-53 211.5 168 60.1
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 6.3e-53 211.5 168 58.9
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 6.3e-53 211.5 168 58.3
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 6.3e-53 211.5 168 58.3
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 8.2e-53 211.1 168 58.9
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 8.2e-53 211.1 174 58.0
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 58.3
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.8e-52 209.9 168 58.9
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 4.1e-52 208.8 168 58.9
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 4.1e-52 208.8 168 57.1
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 9.1e-52 207.6 168 58.3
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 9.1e-52 207.6 163 59.5
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.2e-51 207.2 169 60.4
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 2.0e-51 206.5 168 58.3
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 4.5e-51 205.3 168 58.3
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 7.7e-51 204.5 168 58.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.7e-50 203.4 158 59.5
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 5.0e-50 201.8 172 57.0
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.1e-49 200.7 164 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 54.8
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.9e-49 199.9 150 61.3
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 1.9e-49 199.9 171 57.9
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 5.5e-49 198.4 160 58.1
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 7.2e-49 198.0 171 55.0
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 9.4e-49 197.6 158 57.6
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 1.2e-48 197.2 162 57.4
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 2.7e-48 196.1 171 56.7
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 3.9e-47 192.2 168 56.0
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 1.1e-46 190.7 175 54.3
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 4.4e-46 188.7 175 53.1
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 7.4e-46 188.0 160 54.4
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 9.7e-46 187.6 167 52.7
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 9.7e-46 187.6 170 55.9
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 2.2e-45 186.4 175 52.0
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 8.2e-45 184.5 173 55.5
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 1.1e-44 184.1 168 53.0
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.8e-44 183.3 129 63.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.1e-44 182.2 176 51.7
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 4.1e-44 182.2 176 51.7
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 9.1e-44 181.0 174 54.0
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 3.4e-43 179.1 169 52.1
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 7.7e-43 177.9 158 55.7
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.6e-40 170.2 173 49.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 7.9e-40 167.9 173 49.1
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 3.0e-39 166.0 158 53.2
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.4e-36 157.1 131 60.3
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 5.3e-36 155.2 132 55.3
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 8.5e-34 147.9 120 63.3
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 4.2e-33 145.6 116 61.2
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 9.4e-33 144.4 173 46.2
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 8.0e-32 141.4 168 45.2
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 3.0e-31 139.4 97 64.9
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.2e-22 110.9 139 45.3
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 6.3e-21 105.1 71 62.0
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.4e-20 104.0 139 43.2
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.5e-17 92.0 108 43.5
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.6e-14 83.2 156 33.3
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.7e-13 80.5 168 33.3
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.8e-12 77.0 66 48.5


User provided reference genes

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