Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-112 409.8 202 100.0
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 2.1e-109 399.1 202 97.5
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 1.4e-102 376.3 200 93.0
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 1.6e-101 372.9 205 90.2
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-85 318.9 173 90.8
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-85 318.9 173 90.8
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 6.1e-85 317.8 314 57.3
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 1.3e-82 310.1 205 75.6
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-80 302.4 200 75.5
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 9.2e-73 277.3 174 77.0
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.9e-57 226.5 171 64.9
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 4.1e-57 225.3 171 64.9
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 2.7e-56 222.6 171 62.0
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 1.6e-53 213.4 168 61.3
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 2.1e-53 213.0 173 60.7
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.1e-53 213.0 168 60.7
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.1e-53 213.0 168 60.7
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 60.7
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 61.3
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 2.8e-53 212.6 168 60.7
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 4.7e-53 211.8 168 60.7
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 60.1
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 60.1
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 1.1e-52 210.7 168 60.1
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 1.4e-52 210.3 168 60.1
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.4e-52 210.3 168 60.1
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.4e-52 210.3 168 60.1
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.8e-52 209.9 168 59.5
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.8e-52 209.9 168 59.5
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 1.8e-52 209.9 168 59.5
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 58.3
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 60.1
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.3e-52 209.5 168 59.5
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 60.1
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 58.9
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 59.5
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 60.1
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 60.1
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 3.1e-52 209.1 168 60.1
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.0e-52 208.8 168 59.5
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 4.0e-52 208.8 168 58.9
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 4.0e-52 208.8 168 60.7
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 4.0e-52 208.8 168 60.1
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 58.9
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 59.5
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 59.5
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 60.1
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 5.2e-52 208.4 168 60.1
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 58.9
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 59.5
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 58.9
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 59.5
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 6.8e-52 208.0 168 58.3
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 6.8e-52 208.0 182 56.6
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 58.9
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 58.3
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 60.1
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 8.9e-52 207.6 168 58.9
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 8.9e-52 207.6 196 55.1
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 1.2e-51 207.2 168 58.9
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.2e-51 207.2 168 58.9
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.2e-51 207.2 168 58.9
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 1.2e-51 207.2 182 56.0
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 60.1
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 60.1
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.9
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.5e-51 206.8 168 58.3
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.0e-51 206.5 168 58.3
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 2.6e-51 206.1 168 58.3
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 3.4e-51 205.7 168 59.5
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 3.4e-51 205.7 168 58.9
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.4e-51 205.7 168 58.9
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 4.4e-51 205.3 168 57.7
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 5.8e-51 204.9 168 58.3
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 57.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 57.7
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 7.6e-51 204.5 168 58.3
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.3e-50 203.8 168 58.3
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 1.3e-50 203.8 182 56.0
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 1.3e-50 203.8 182 54.4
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 57.7
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.7e-50 203.4 168 57.7
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 58.3
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 2.2e-50 203.0 168 57.7
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.9e-50 202.6 168 58.3
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.7e-50 202.2 168 57.7
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.7e-50 202.2 168 57.7
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 3.7e-50 202.2 182 54.4
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 4.9e-50 201.8 168 57.1
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 4.9e-50 201.8 182 54.4
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 4.9e-50 201.8 168 57.1
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 8.3e-50 201.1 168 57.7
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 8.3e-50 201.1 168 56.5
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.1e-49 200.7 170 57.6
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 57.1
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.4e-49 200.3 168 56.5
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.9e-49 199.9 168 56.5
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 2.4e-49 199.5 168 56.5
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 2.4e-49 199.5 168 57.7
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.4e-49 199.5 168 58.3
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 57.7
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 57.7
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 4.1e-49 198.7 168 56.0
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 5.4e-49 198.4 168 56.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 7.1e-49 198.0 168 57.1
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 9.2e-49 197.6 168 55.4
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.2e-48 197.2 168 56.0
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.6e-48 195.3 192 52.1
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 4.6e-48 195.3 158 58.9
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 6.0e-48 194.9 169 55.6
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 6.0e-48 194.9 163 56.4
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 7.8e-48 194.5 168 56.0
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 1.0e-47 194.1 168 56.0
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 1.0e-47 194.1 168 56.0
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 1.0e-47 194.1 168 56.0
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 1.0e-47 194.1 183 54.6
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 3.9e-47 192.2 168 55.4
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 3.9e-47 192.2 194 51.5
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.9e-46 189.9 149 59.1
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.9e-46 189.9 164 56.7
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 3.3e-46 189.1 175 53.7
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 4.3e-46 188.7 168 53.6
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 4.3e-46 188.7 162 56.8
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 1.2e-45 187.2 170 52.9
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 1.2e-45 187.2 181 51.9
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 4.7e-45 185.3 173 53.2
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.4e-44 183.7 177 53.1
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.4e-44 183.0 152 56.6
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.4e-44 183.0 152 56.6
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 4.0e-44 182.2 169 56.2
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 5.2e-44 181.8 168 55.4
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 9.9e-43 177.6 173 52.0
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.2e-42 176.4 169 51.5
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 2.2e-42 176.4 173 52.0
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 6.4e-42 174.9 168 53.0
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.1e-41 174.1 173 50.9
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 1.9e-41 173.3 156 57.7
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 3.2e-41 172.6 130 60.0
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 2.1e-40 169.9 156 54.5
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 9.6e-38 161.0 156 52.6
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.8e-36 156.8 155 50.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 9.0e-36 154.5 155 49.7
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.4e-34 148.3 132 56.1
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 5.4e-33 145.2 147 51.7
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 7.1e-33 144.8 97 66.0
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.3e-31 140.6 168 45.8
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 5.1e-31 138.7 114 61.4
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 2.1e-29 133.3 116 57.8
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.1e-28 131.0 155 46.5
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 2.4e-20 103.2 71 62.0
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.8e-19 98.6 139 42.4
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.1e-17 91.7 139 40.3
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.8e-15 87.0 87 49.4
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.5e-14 83.2 153 32.7
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 3.1e-12 76.3 66 50.0
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 4.5e-11 72.4 168 29.8


User provided reference genes

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