Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 7.9e-91 337.0 163 100.0
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 9.0e-87 323.6 163 95.7
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.6e-86 322.0 163 94.5
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 7.7e-62 240.7 146 78.8
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.7e-61 239.6 152 76.3
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.9e-60 236.1 158 72.2
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 5.7e-57 224.6 162 69.1
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.0e-50 203.8 132 73.5
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.7e-45 186.4 132 67.4
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 3.8e-45 185.3 133 68.4
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.7e-43 179.1 133 67.7
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.7e-43 179.1 133 67.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 3.6e-43 178.7 140 60.0
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.5e-41 173.3 136 58.1
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 5.7e-41 171.4 153 57.5
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.8e-40 169.1 154 56.5
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.4e-39 166.8 144 58.3
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.3e-39 164.9 135 59.3
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 5.3e-39 164.9 138 55.1
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.3e-39 164.9 138 54.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.0e-38 162.9 140 56.4
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.5e-38 162.2 140 57.9
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.5e-36 156.8 122 63.1
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 3.2e-36 155.6 141 51.8
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 4.2e-36 155.2 153 51.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 7.2e-36 154.5 141 51.8
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 7.2e-36 154.5 136 55.1
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 2.7e-35 152.5 138 55.1
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 3.6e-35 152.1 129 55.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 3.6e-35 152.1 163 48.5
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 6.1e-35 151.4 125 60.0
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 8.0e-35 151.0 153 49.7
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 3.0e-34 149.1 154 49.4
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 5.2e-34 148.3 141 49.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 6.8e-34 147.9 138 51.4
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 8.8e-34 147.5 126 59.5
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 8.8e-34 147.5 126 59.5
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 8.8e-34 147.5 141 55.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.5e-33 146.7 132 53.8
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.5e-33 146.7 132 53.8
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.6e-33 146.0 126 58.7
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.6e-33 146.0 126 57.9
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.6e-33 146.0 126 57.9
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.4e-33 145.2 133 54.1
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 4.4e-33 145.2 146 51.4
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 5.7e-33 144.8 132 53.8
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 7.5e-33 144.4 135 51.9
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 7.5e-33 144.4 161 46.6
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 9.8e-33 144.1 120 59.2
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 9.8e-33 144.1 140 52.1
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 9.8e-33 144.1 124 58.1
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 1.3e-32 143.7 154 48.7
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.7e-32 143.3 155 47.7
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 2.2e-32 142.9 139 51.1
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 2.8e-32 142.5 138 50.0
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 3.7e-32 142.1 123 51.2
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 6.3e-32 141.4 123 55.3
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 6.3e-32 141.4 165 47.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 8.3e-32 141.0 125 53.6
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.1e-31 138.7 134 53.0
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.0e-31 137.9 130 50.8
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.0e-31 137.9 130 50.8
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 9.1e-31 137.5 139 54.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 9.1e-31 137.5 133 48.1
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.6e-30 136.7 138 50.0
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 2.7e-30 136.0 146 46.6
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 3.5e-30 135.6 123 50.4
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 4.5e-30 135.2 149 46.3
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.9e-29 132.5 135 49.6
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 5.0e-29 131.7 128 51.6
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 5.0e-29 131.7 129 50.4
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.1e-28 130.6 137 48.9
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 4.2e-28 128.6 111 50.5
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 9.5e-28 127.5 161 42.2
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.8e-27 125.9 122 49.2
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.6e-27 125.6 143 40.6
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 4.7e-27 125.2 152 45.4
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 4.7e-27 125.2 124 47.6
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 6.1e-27 124.8 141 44.7
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 8.0e-27 124.4 129 47.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.4e-26 123.6 129 45.0
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 1.8e-26 123.2 120 51.7
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 3.0e-26 122.5 138 43.5
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 6.8e-26 121.3 126 46.0
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 8.9e-26 120.9 145 42.8
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 2.6e-25 119.4 110 55.5
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 5.7e-25 118.2 127 47.2
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 5.7e-25 118.2 133 45.1
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 5.7e-25 118.2 118 45.8
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 2.2e-24 116.3 132 43.9
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 5.4e-23 111.7 102 55.9
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 7.0e-23 111.3 136 42.6
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 2.7e-22 109.4 114 47.4
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 2.3e-21 106.3 110 47.3
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 2.9e-21 105.9 151 40.4
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.9e-21 105.5 124 46.0
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 5.0e-21 105.1 110 47.3
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 5.0e-21 105.1 141 39.7
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 2.5e-20 102.8 114 44.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 3.6e-19 99.0 102 51.0
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 3.6e-19 99.0 102 51.0
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 3.6e-19 99.0 108 46.3
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.5e-17 93.6 131 40.5
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.7e-16 90.1 78 50.0
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 6.4e-16 88.2 116 42.2
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 8.3e-16 87.8 90 45.6
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.7e-14 82.8 85 49.4
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 6.2e-11 71.6 71 45.1
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.1e-10 69.3 54 57.4
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.1e-10 69.3 54 57.4
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 2.6e-09 66.2 53 54.7
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 3.4e-09 65.9 77 46.8
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 4.4e-09 65.5 95 36.8
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 5.8e-09 65.1 65 49.2
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 9.8e-09 64.3 106 35.8
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.2e-06 57.4 53 52.8
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 6.0e-06 55.1 51 52.9
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 7.8e-06 54.7 50 50.0


User provided reference genes

Program Settings