Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.0e-106 390.2 218 100.0
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.4e-95 353.2 218 92.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.5e-89 333.2 240 83.8
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.1e-61 238.4 284 56.0
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.1e-55 218.0 283 53.4
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 9.3e-55 217.6 247 58.3
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.8e-49 198.4 252 54.4
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 3.7e-43 179.1 216 59.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 3.1e-42 176.0 229 54.1
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 1.2e-38 164.1 266 44.4
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 1.8e-37 160.2 258 50.4
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.6e-35 153.7 213 52.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 4.8e-35 152.1 258 42.6
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.3e-35 151.8 273 41.0
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.5e-33 145.6 272 42.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.5e-32 141.4 240 42.9
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.1e-31 141.0 252 44.4
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 4.2e-31 139.0 307 39.7
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 7.2e-31 138.3 318 38.4
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.6e-30 137.1 235 47.2
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.6e-30 136.0 240 41.7
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 7.9e-30 134.8 260 41.9
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 5.1e-29 132.1 266 40.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 5.7e-28 128.6 250 40.8
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 2.4e-26 123.2 306 40.2
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 4.1e-26 122.5 222 43.2
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 5.3e-26 122.1 262 40.5
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 1.2e-25 120.9 249 44.2
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.2e-25 120.9 222 40.1
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-25 120.6 265 40.0
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 4.5e-25 119.0 198 50.0
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.9e-24 116.3 243 41.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 2.9e-24 116.3 251 38.6
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.0e-24 115.5 250 40.0
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 6.5e-24 115.2 232 42.7
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 8.5e-24 114.8 235 43.0
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 4.2e-23 112.5 275 35.6
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 2.7e-22 109.8 263 35.4
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.6e-22 109.4 245 38.8
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 6.1e-22 108.6 223 38.6
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.8e-21 107.1 233 37.8
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.8e-21 107.1 225 37.8
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 3.9e-21 105.9 308 32.8
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 5.2e-21 105.5 236 42.8
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 5.2e-21 105.5 270 39.3
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-20 104.4 257 38.1
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.5e-20 104.0 306 34.6
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.5e-20 104.0 269 35.7
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.6e-20 103.2 267 39.0
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.4e-20 102.4 236 39.0
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 5.7e-20 102.1 251 37.8
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.7e-20 102.1 266 36.8
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.7e-20 102.1 231 40.3
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.2e-19 100.1 231 39.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.8e-19 99.8 139 44.6
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 6.3e-19 98.6 323 31.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.1e-18 97.8 267 37.5
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.1e-18 97.8 218 41.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.4e-18 96.7 117 57.3
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 5.3e-18 95.5 259 34.7
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.1e-18 94.7 266 35.7
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.1e-18 94.7 112 56.2
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 2.6e-17 93.2 265 33.6
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 3.5e-17 92.8 90 62.2
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.7e-16 90.5 266 33.5
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.7e-16 90.5 250 34.4
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 2.2e-16 90.1 255 36.5
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 5.0e-16 89.0 242 35.5
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.5e-16 88.6 178 38.8
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 8.5e-16 88.2 165 43.6
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.1e-15 87.8 97 51.5
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.5e-15 86.7 252 37.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 3.2e-15 86.3 266 33.5
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 9.4e-15 84.7 178 38.2
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 9.4e-15 84.7 204 36.3
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.6e-14 82.8 64 71.9
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.6e-14 82.8 62 72.6
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 6.1e-14 82.0 247 34.8
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.0e-13 81.3 247 33.6
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.8e-13 80.5 133 43.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 2.3e-13 80.1 238 34.0
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.3e-13 80.1 178 36.5
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 4.0e-13 79.3 82 53.7
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 4.0e-13 79.3 210 35.7
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 6.7e-13 78.6 265 32.1
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 8.8e-13 78.2 140 44.3
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.5e-12 77.4 238 31.1
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.5e-12 77.4 98 50.0
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 7.5e-12 75.1 70 58.6
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 7.5e-12 75.1 101 47.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.7e-12 74.7 230 32.6
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.3e-11 74.3 229 31.9
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.7e-11 73.9 171 37.4
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.2e-11 73.6 225 36.9
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 2.8e-11 73.2 68 58.8
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.8e-11 73.2 173 38.2
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 3.7e-11 72.8 104 48.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 8.2e-11 71.6 94 51.1
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.1e-10 71.2 161 37.3
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.1e-10 71.2 156 42.9
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.4e-10 70.9 155 38.7
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.4e-10 70.9 160 43.8
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.8e-10 70.5 285 32.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 2.4e-10 70.1 215 35.8
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 3.1e-10 69.7 165 37.0
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 3.1e-10 69.7 165 37.0
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 3.1e-10 69.7 165 37.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.1e-10 69.7 161 34.2
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 4.1e-10 69.3 144 41.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.1e-10 69.3 171 36.3
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 5.3e-10 68.9 164 35.4
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 9.1e-10 68.2 64 62.5
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 9.1e-10 68.2 100 46.0
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.2e-09 67.8 163 39.3
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.6e-09 67.4 63 60.3
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.6e-09 67.4 72 59.7
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 2.0e-09 67.0 260 30.0
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 3.5e-09 66.2 113 43.4
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 7.7e-09 65.1 257 31.5
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.0e-08 64.7 106 43.4
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 2.2e-08 63.5 61 59.0
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.9e-08 63.2 155 34.8
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 3.8e-08 62.8 67 50.7
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 6.5e-08 62.0 242 30.6
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.1e-07 61.2 67 49.3
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.5e-07 60.1 215 30.7
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 4.2e-07 59.3 211 33.2
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 5.5e-07 58.9 191 34.6
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 9.4e-07 58.2 226 30.5
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 9.4e-07 58.2 193 34.7
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.6e-06 57.4 171 35.7
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 3.6e-06 56.2 38 73.7


User provided reference genes

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