Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 5.5e-109 399.4 202 100.0
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.4e-103 380.2 200 96.0
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.0e-70 272.3 144 95.1
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 4.0e-59 233.8 232 55.2
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.2e-59 233.4 235 54.9
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 5.7e-58 229.9 234 54.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 6.1e-52 209.9 185 57.8
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.1e-44 184.9 151 60.9
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 6.2e-44 183.3 262 42.7
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.9e-40 171.8 170 51.2
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.9e-37 161.8 185 45.9
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.9e-37 161.8 111 71.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 3.3e-37 161.0 181 45.3
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.4e-35 155.6 154 50.0
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 6.4e-33 146.7 204 44.6
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 8.3e-33 146.4 178 43.3
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 7.8e-31 139.8 163 46.6
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.7e-30 138.7 201 37.3
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.9e-30 137.5 140 46.4
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 5.1e-30 137.1 170 43.5
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 5.1e-30 137.1 170 43.5
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 4.3e-29 134.0 171 42.7
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.3e-29 133.3 183 37.7
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.1e-28 131.7 218 37.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 8.1e-28 129.8 147 45.6
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.1e-27 129.4 186 38.7
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.4e-27 129.0 164 37.8
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 2.4e-27 128.3 172 39.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 4.0e-27 127.5 190 38.9
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 8.9e-27 126.3 171 36.8
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.5e-26 125.6 187 36.9
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.0e-26 125.2 175 34.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 2.0e-26 125.2 178 39.3
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.0e-26 125.2 178 39.3
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.6e-26 124.8 162 43.2
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.8e-26 123.6 178 38.8
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 5.8e-26 123.6 162 42.6
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 7.6e-26 123.2 173 38.2
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 9.9e-26 122.9 207 36.7
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.3e-25 122.5 162 42.6
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-25 122.1 181 38.7
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 2.9e-25 121.3 177 35.0
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.1e-24 119.4 179 38.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.4e-24 119.0 179 38.0
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.4e-24 119.0 179 38.0
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.9e-24 118.6 206 35.4
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 4.2e-24 117.5 195 33.3
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 4.2e-24 117.5 179 38.5
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.4e-24 117.1 173 38.2
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.6e-23 115.5 169 36.7
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 1.6e-23 115.5 172 37.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.7e-23 114.8 176 37.5
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 4.6e-23 114.0 184 36.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 7.8e-23 113.2 207 35.7
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.3e-22 112.5 173 35.8
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 1.7e-22 112.1 169 34.9
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 3.9e-22 110.9 199 33.7
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.1e-21 109.4 177 38.4
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-21 109.4 138 42.8
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.3e-21 107.8 145 42.1
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 9.6e-21 106.3 141 39.0
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 9.6e-21 106.3 189 31.7
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.8e-20 104.0 123 43.9
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 6.2e-20 103.6 181 36.5
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.1e-20 103.2 162 35.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.1e-19 102.8 135 41.5
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.8e-19 102.1 115 47.8
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.2e-18 99.4 125 44.0
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-18 98.6 159 35.2
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.0e-18 98.6 125 42.4
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 2.6e-18 98.2 148 36.5
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 4.4e-18 97.4 136 39.0
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.4e-18 97.4 179 30.2
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 5.8e-18 97.1 176 36.4
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.3e-17 95.9 150 36.7
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.7e-17 95.5 157 32.5
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-17 95.5 142 34.5
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 2.2e-17 95.1 201 31.3
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.2e-17 95.1 161 34.8
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 2.2e-17 95.1 132 37.9
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.8e-17 94.4 150 34.0
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 4.9e-17 94.0 163 35.6
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 6.4e-17 93.6 138 36.2
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.1e-16 92.8 130 39.2
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.4e-16 92.4 150 34.7
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.4e-16 92.4 139 39.6
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.4e-16 92.4 149 33.6
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.9e-16 92.0 175 32.0
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 3.2e-16 91.3 131 37.4
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 3.2e-16 91.3 134 39.6
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.2e-16 90.9 140 35.7
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 4.2e-16 90.9 144 36.8
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 5.4e-16 90.5 172 32.6
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 5.4e-16 90.5 140 35.7
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.5e-15 87.8 141 29.8
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 3.5e-15 87.8 172 33.7
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 7.8e-15 86.7 132 39.4
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.3e-14 85.9 90 50.0
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.3e-14 85.9 134 30.6
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 2.3e-14 85.1 134 35.1
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.9e-14 84.3 151 33.8
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 5.1e-14 84.0 151 34.4
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 1.9e-13 82.0 133 35.3
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 1.9e-13 82.0 76 52.6
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.5e-13 81.6 173 34.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 5.6e-13 80.5 138 31.2
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 5.6e-13 80.5 138 33.3
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 9.6e-13 79.7 76 48.7
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 9.6e-13 79.7 124 32.3
Peaxi162Scf00450g00074 Petunia axillaris HOM05D004255 ORTHO05D004815 1.3e-12 79.3 53 69.8
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.6e-12 79.0 147 34.0
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.1e-12 78.6 153 31.4
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.1e-12 78.6 106 39.6
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 3.6e-12 77.8 125 31.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 8.1e-12 76.6 137 31.4
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 8.1e-12 76.6 123 37.4
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.1e-11 76.3 140 32.9
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.1e-11 76.3 101 41.6
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.8e-11 75.5 144 31.9
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.4e-11 75.1 157 31.8
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 4.0e-11 74.3 135 32.6
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 5.3e-11 73.9 143 30.8
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 6.9e-11 73.6 186 28.0
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 6.9e-11 73.6 143 34.3
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.2e-10 72.8 135 31.9
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.4e-10 71.2 135 28.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 4.5e-10 70.9 98 37.8
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.6e-10 70.1 147 30.6
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 9.9e-10 69.7 179 27.4
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.9e-09 68.2 98 38.8
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 2.9e-09 68.2 56 57.1
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 3.8e-09 67.8 138 30.4
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.9e-09 67.4 96 38.5
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 8.4e-09 66.6 161 26.1
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 1.4e-08 65.9 142 32.4
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-08 65.9 85 41.2
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 1.9e-08 65.5 189 27.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 3.2e-08 64.7 144 29.9
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 3.2e-08 64.7 144 29.9
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 3.2e-08 64.7 137 32.1
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 5.4e-08 63.9 102 31.4
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 7.1e-08 63.5 144 29.2
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 9.3e-08 63.2 204 25.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.2e-07 62.8 172 23.8
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 1.6e-07 62.4 208 26.0
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.6e-07 62.4 174 27.0
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.7e-07 61.6 142 30.3
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 2.7e-07 61.6 196 27.6
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 3.5e-07 61.2 163 27.0
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 3.5e-07 61.2 141 27.7
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.6e-07 60.8 162 28.4
Os07g0671200 Oryza sativa ssp. japonica HOM05D032177 ORTHO05D004815 7.9e-07 60.1 154 28.6
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.0e-06 59.7 111 26.1
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 1.3e-06 59.3 158 25.9
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 1.3e-06 59.3 156 22.4
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 1.3e-06 59.3 188 27.1
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 1.8e-06 58.9 168 23.8
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 1.8e-06 58.9 202 23.3
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 2.3e-06 58.5 145 26.2
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.0e-06 58.2 172 26.7
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 3.0e-06 58.2 204 25.5
CAN.G1169.10 Capsicum annuum HOM05D023770 ORTHO05D024770 5.1e-06 57.4 38 63.2
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 5.1e-06 57.4 200 23.0
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 6.7e-06 57.0 174 27.0
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 6.7e-06 57.0 179 25.7
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 8.7e-06 56.6 82 31.7


User provided reference genes

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