Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-299 1032.3 513 100.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.8e-282 975.3 513 95.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 6.2e-275 950.3 513 91.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.4e-273 944.5 510 90.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.6e-257 891.7 514 85.6
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 9.0e-250 866.7 514 83.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.4e-248 860.5 514 82.5
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.5e-241 837.8 514 79.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.5e-239 832.0 513 82.1
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.7e-237 823.5 513 81.5
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.5e-236 822.8 514 79.0
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.8e-235 818.5 511 78.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 4.6e-230 801.2 514 78.8
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.8e-227 792.0 511 74.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 9.0e-226 786.9 515 75.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.4e-225 785.0 514 76.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 5.9e-225 784.3 511 76.3
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.5e-224 780.4 510 74.7
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.1e-223 780.0 510 74.9
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.0e-221 773.5 511 73.8
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.4e-221 773.1 513 74.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.3e-221 772.3 513 75.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-221 772.3 528 75.2
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.7e-221 770.8 511 74.4
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.7e-221 770.8 511 74.8
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.8e-221 770.4 510 75.5
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.3e-219 766.5 504 77.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.3e-219 766.5 513 74.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.8e-219 765.4 510 73.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 4.8e-219 764.6 511 74.4
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 8.2e-219 763.8 545 70.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.1e-218 760.4 489 75.9
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.5e-217 758.1 510 72.9
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 6.5e-216 754.2 511 72.6
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 6.5e-216 754.2 509 74.3
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.1e-215 753.4 514 73.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.9e-215 752.7 510 73.7
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.5e-215 752.3 511 71.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 5.5e-215 751.1 510 73.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.5e-215 751.1 516 72.9
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.2e-214 750.0 514 73.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.6e-214 748.4 510 71.6
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.6e-214 748.4 511 70.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.7e-214 748.0 514 71.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 7.9e-214 747.3 511 72.2
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.0e-213 746.9 503 72.8
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.4e-213 746.5 514 73.0
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-213 746.5 503 73.0
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.8e-213 746.1 514 72.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 3.0e-213 745.3 508 72.4
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 5.1e-213 744.6 511 72.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 5.1e-213 744.6 513 73.1
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-212 743.4 510 72.2
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.3e-211 737.6 510 71.4
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 9.1e-210 733.8 452 79.9
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.2e-209 733.4 513 71.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.3e-208 729.9 514 71.0
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 2.9e-208 728.8 510 69.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.0e-208 728.0 510 71.2
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-207 726.5 507 71.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.5e-207 725.7 513 71.0
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.5e-207 725.7 511 71.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.2e-207 725.3 510 71.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 5.5e-207 724.5 513 70.4
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 5.5e-207 724.5 513 70.6
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.5e-207 724.5 512 70.9
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 7.2e-207 724.2 513 70.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 7.2e-207 724.2 514 70.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 9.4e-207 723.8 512 71.1
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.1e-206 722.6 513 70.8
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.7e-206 722.2 481 74.6
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.7e-206 722.2 598 63.4
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.6e-206 721.8 514 70.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 8.0e-206 720.7 513 70.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 8.0e-206 720.7 521 69.3
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.8e-205 719.5 549 66.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.3e-205 719.2 513 70.4
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.0e-205 718.8 549 66.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.9e-205 718.4 527 68.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.8e-205 717.2 506 70.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-204 716.8 513 70.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-204 715.7 513 69.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.6e-204 715.7 514 70.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.6e-204 715.7 514 69.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.6e-204 715.7 511 69.1
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.3e-204 715.3 513 69.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.4e-204 714.9 514 69.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.4e-204 714.9 514 69.8
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 7.4e-204 714.1 513 68.8
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.2e-203 712.6 526 70.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-203 712.2 513 69.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-203 711.8 514 69.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-203 711.8 516 69.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.8e-203 711.4 515 68.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.8e-203 711.4 514 69.6
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 8.2e-203 710.7 512 68.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 8.2e-203 710.7 508 70.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.1e-202 708.4 404 85.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 9.1e-202 707.2 510 69.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.9e-201 704.5 512 67.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.2e-200 702.6 478 71.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 6.5e-200 701.0 477 72.3
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.9e-199 699.5 497 70.8
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 4.7e-198 694.9 564 64.7
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.2e-197 691.4 510 68.6
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.8e-197 691.0 510 68.6
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.5e-196 689.9 509 67.6
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 8.3e-195 684.1 513 66.3
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 3.8e-192 675.2 515 68.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.2e-191 671.0 536 65.1
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.2e-190 670.2 512 65.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.7e-190 669.1 510 66.3
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 4.7e-190 668.3 504 65.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.0e-190 667.5 500 66.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.0e-189 667.2 514 65.2
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.8e-189 666.4 462 72.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 6.8e-189 664.5 588 58.7
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.5e-188 661.0 500 66.2
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 9.8e-188 660.6 489 68.7
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.6e-185 653.3 512 64.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 8.0e-182 641.0 452 70.4
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.3e-181 639.4 404 76.5
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 9.8e-180 634.0 511 63.4
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-179 633.3 456 69.5
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 5.2e-157 558.5 541 54.2
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.9e-156 554.3 488 60.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.4e-154 549.7 661 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 3.2e-154 549.3 528 54.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.1e-152 542.0 273 97.1
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.5e-140 503.8 456 58.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.0e-140 503.4 425 60.0
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.1e-133 479.6 513 53.2
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.2e-124 451.1 342 66.4
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.0e-112 411.4 275 76.4
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.7e-105 386.7 280 68.6
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 9.1e-93 345.1 242 70.7
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.2e-82 310.1 240 62.5
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.1e-81 305.8 213 70.0
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.7e-78 297.7 262 58.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 8.3e-78 295.4 219 69.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.4e-72 278.1 507 38.9
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.1e-61 241.9 573 31.2
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.8e-57 227.3 392 35.7
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.6e-44 184.9 114 79.8
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 5.6e-42 176.4 136 63.2
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.3e-40 171.0 189 49.7
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.6e-39 166.0 121 65.3
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 9.2e-37 159.1 109 75.2
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.3e-34 150.2 187 42.2
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.7e-30 138.3 250 37.2
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.9e-30 136.7 250 36.8
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 6.0e-28 129.8 68 86.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-22 110.5 71 77.5
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 7.4e-18 96.3 73 69.9
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.3e-17 95.5 169 29.0
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 3.8e-14 84.0 113 43.4
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 9.3e-13 79.3 76 56.6
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 4.3e-10 70.5 241 26.1
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.1e-09 68.2 87 48.3
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.4e-08 64.7 36 83.3
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.5e-07 62.0 110 29.1
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-06 59.3 108 40.7


User provided reference genes

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