Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.2e-75 287.0 201 100.0
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 6.3e-74 281.2 201 98.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 6.3e-66 254.6 201 92.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.9e-54 216.5 205 81.0
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 9.8e-51 204.1 205 80.0
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.3e-46 189.1 204 66.2
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.6e-43 179.5 206 72.3
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 2.9e-42 176.0 201 71.1
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 6.4e-42 174.9 206 73.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 6.4e-42 174.9 201 68.7
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 7.0e-41 171.4 196 57.1
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 6.0e-40 168.3 201 70.1
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.0e-39 167.5 203 70.9
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.0e-39 166.0 200 69.5
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.0e-39 166.0 203 70.0
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.3e-38 161.4 201 64.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.6e-37 159.1 207 69.6
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 6.2e-37 158.3 200 64.5
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 6.2e-37 158.3 205 71.2
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 8.1e-37 157.9 202 68.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.1e-36 157.5 202 68.8
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.8e-36 156.8 205 69.3
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.8e-36 156.8 205 69.3
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.8e-36 156.8 206 69.9
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 2.3e-36 156.4 206 69.4
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 4.0e-36 155.6 203 62.1
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 5.2e-36 155.2 200 66.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.2e-35 154.1 206 66.5
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.2e-35 154.1 204 68.6
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.0e-35 153.3 205 69.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.0e-35 153.3 205 71.7
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.6e-35 152.9 202 68.8
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.6e-35 152.9 205 70.7
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 2.6e-35 152.9 204 68.1
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 4.4e-35 152.1 204 64.2
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.4e-35 152.1 201 68.2
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.8e-35 151.8 200 70.0
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 5.8e-35 151.8 201 71.1
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 5.8e-35 151.8 173 69.9
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 5.8e-35 151.8 173 69.9
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 7.5e-35 151.4 187 72.7
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 7.5e-35 151.4 196 70.9
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 9.9e-35 151.0 201 62.2
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 9.9e-35 151.0 169 78.7
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 9.9e-35 151.0 199 69.3
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.3e-34 150.6 207 64.3
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.3e-34 150.6 231 61.9
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.7e-34 150.2 205 70.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.7e-34 150.2 203 55.7
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 2.2e-34 149.8 197 64.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.9e-34 149.4 202 61.9
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 2.9e-34 149.4 211 66.8
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 2.9e-34 149.4 204 67.2
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.9e-34 149.4 207 65.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 3.7e-34 149.1 205 70.2
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.7e-34 149.1 206 65.5
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.7e-34 149.1 201 66.2
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 3.7e-34 149.1 202 67.8
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 4.9e-34 148.7 201 66.2
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 6.4e-34 148.3 207 66.2
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 8.3e-34 147.9 201 67.2
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.3e-34 147.9 201 70.6
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 1.1e-33 147.5 218 61.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.9e-33 146.7 206 66.0
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.4e-33 145.2 208 64.9
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 5.4e-33 145.2 207 66.2
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 5.4e-33 145.2 204 66.7
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 7.1e-33 144.8 208 56.2
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.2e-32 144.1 193 67.4
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.2e-32 144.1 193 67.4
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.6e-32 143.7 197 67.0
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.6e-32 143.7 187 71.1
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.1e-32 143.3 207 65.2
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 2.1e-32 143.3 202 65.3
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 2.1e-32 143.3 202 65.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 2.1e-32 143.3 205 64.9
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.7e-32 142.9 201 64.2
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.7e-32 142.9 184 70.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 3.5e-32 142.5 202 65.3
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 4.6e-32 142.1 207 69.1
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 6.0e-32 141.7 203 65.0
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 6.0e-32 141.7 193 69.9
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-31 141.0 198 41.9
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.7e-31 140.2 199 61.3
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 3.0e-31 139.4 200 59.5
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 3.9e-31 139.0 206 64.1
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 3.9e-31 139.0 206 64.6
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 5.1e-31 138.7 200 58.5
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 5.1e-31 138.7 198 41.4
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 6.6e-31 138.3 201 64.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 8.6e-31 137.9 258 44.6
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.5e-30 137.1 199 59.3
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.5e-30 137.1 198 41.4
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.5e-30 137.1 198 41.4
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 3.3e-30 136.0 225 61.8
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-30 135.6 197 58.9
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 7.3e-30 134.8 201 62.7
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 1.6e-29 133.7 200 54.0
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 4.7e-29 132.1 136 69.1
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 8.1e-29 131.3 200 57.0
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 8.1e-29 131.3 199 48.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-28 129.4 195 57.4
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 4.0e-28 129.0 138 68.1
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 6.8e-28 128.3 198 64.1
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-27 127.5 187 40.1
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.5e-27 127.1 189 66.1
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.6e-27 126.3 179 67.6
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 4.4e-27 125.6 199 55.3
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.2e-26 123.2 199 64.3
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 4.9e-26 122.1 160 73.1
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 1.9e-25 120.2 138 84.1
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.6e-24 117.1 122 78.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 4.6e-24 115.5 203 62.1
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 6.0e-24 115.2 180 46.7
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 4.3e-22 109.0 198 49.0
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 7.3e-22 108.2 199 35.7
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.2e-21 107.5 207 48.3
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 1.8e-20 103.6 187 49.7
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.0e-20 102.4 141 60.3
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-19 100.9 194 53.6
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-19 100.9 194 53.6
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-19 100.9 194 53.6
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.2e-19 100.9 194 53.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.6e-19 99.8 194 55.7
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 5.8e-19 98.6 194 55.7
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 5.8e-19 98.6 194 55.7
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 7.6e-19 98.2 199 37.2
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 7.6e-19 98.2 199 37.2
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 7.6e-19 98.2 199 37.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 9.9e-19 97.8 199 37.2
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.2e-17 92.8 150 72.0
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.2e-17 92.4 103 52.4
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.4e-17 92.0 154 68.8
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.6e-16 90.5 138 51.4
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.1e-16 90.1 139 67.6
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.0e-15 87.8 184 55.4
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 5.1e-15 85.5 81 81.5
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.3e-14 82.4 145 47.6
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 6.2e-13 78.6 41 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 9.0e-12 74.7 92 45.7
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 7.6e-11 71.6 181 54.7
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.6e-08 63.9 162 31.5
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 1.8e-07 60.5 117 56.4
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 2.3e-07 60.1 81 43.2
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 3.0e-07 59.7 61 47.5
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 1.1e-06 57.8 94 37.2


User provided reference genes

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