Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.3e-45 186.0 93 100.0
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.9e-43 177.2 93 93.5
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.5e-41 169.9 93 91.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 7.3e-25 117.1 88 63.6
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 4.0e-23 111.3 95 64.2
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-21 105.9 80 62.5
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-20 102.4 60 81.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.2e-20 101.7 81 61.7
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.3e-18 96.3 90 55.6
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.6e-16 88.2 81 55.6
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.6e-14 82.0 95 51.6
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.2e-13 79.0 96 45.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-12 76.3 98 49.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 49.5
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.2e-12 75.1 79 46.8
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.4e-12 74.3 97 48.5
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.8e-11 70.5 90 47.8
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.8e-11 70.5 71 46.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.0e-10 70.1 83 45.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.3e-10 69.7 91 45.1
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 6.6e-10 67.4 80 45.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.7e-10 67.0 60 51.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 77 45.5
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-09 66.6 90 44.4
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 42.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.1e-09 66.6 53 54.7
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 52 55.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 43 72.1
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-09 66.2 90 45.6
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.9e-09 65.9 89 46.1
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-09 65.5 52 51.9
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.5e-09 65.5 69 49.3
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 39.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.3e-09 65.1 74 44.6
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.3e-09 64.7 90 42.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 4.3e-09 64.7 80 45.0
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 5.6e-09 64.3 37 73.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.3e-09 63.9 85 42.4
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.3e-09 63.9 43 62.8
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 7.3e-09 63.9 94 42.6
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.3e-09 63.9 54 55.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 74 47.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.6e-08 62.8 42 69.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 42 69.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 42 69.0
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-08 62.8 42 69.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.1e-08 62.4 41 63.4
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-08 62.4 56 51.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-08 62.4 56 51.8
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.1e-08 62.4 75 44.0
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.8e-08 62.0 88 44.3
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.8e-08 62.0 88 44.3
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.8e-08 62.0 92 40.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.6e-08 61.6 88 39.8
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.6e-08 61.6 85 43.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 3.6e-08 61.6 78 44.9
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.6e-08 61.6 82 43.9
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 4.8e-08 61.2 91 37.4
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 4.8e-08 61.2 91 37.4
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.8e-08 61.2 41 61.0
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-08 60.8 85 41.2
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.1e-08 60.5 93 35.5
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.1e-08 60.5 80 45.0
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 8.1e-08 60.5 87 42.5
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 8.1e-08 60.5 90 42.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.1e-08 60.5 92 42.4
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 8.1e-08 60.5 48 60.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 84 39.3
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 100 36.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-07 60.1 100 36.0
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 91 40.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.4e-07 59.7 89 43.8
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.4e-07 59.7 86 43.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.4e-07 59.7 76 40.8
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.4e-07 59.7 94 38.3
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 92 44.6
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 53 52.8
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 61 55.7
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 101 39.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.8e-07 59.3 37 67.6
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.4e-07 58.9 55 47.3
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 86 40.7
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 42 61.9
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 84 44.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.4e-07 58.9 88 38.6
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-07 58.5 42 66.7
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 3.1e-07 58.5 77 45.5
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 49 53.1
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 44 59.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 49 53.1
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.0e-07 58.2 84 36.9
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.0e-07 58.2 38 68.4
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 5.3e-07 57.8 96 38.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.3e-07 57.8 44 54.5
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.3e-07 57.8 91 39.6
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.3e-07 57.8 62 45.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 42 59.5
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 82 45.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-07 57.8 41 65.9
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-07 57.8 41 65.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 6.9e-07 57.4 86 40.7
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.9e-07 57.4 81 44.4
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 6.9e-07 57.4 83 42.2
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.9e-07 57.4 83 34.9
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.0e-07 57.0 37 64.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 39 59.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.2e-06 56.6 38 63.2
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-06 56.6 42 57.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-06 56.6 91 39.6
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 84 33.3
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 86 41.9
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 90 33.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 57 47.4
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.5e-06 56.2 93 37.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 50 48.0
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.0e-06 55.8 98 41.8
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.0e-06 55.8 42 61.9
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-06 55.5 91 38.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-06 55.5 92 34.8
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 85 40.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-06 55.5 84 32.1
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.6e-06 55.5 90 38.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-06 55.5 83 41.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.4e-06 55.1 83 37.3
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 3.4e-06 55.1 85 37.6
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 3.4e-06 55.1 50 58.0
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.4e-06 55.1 45 53.3
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.4e-06 55.1 91 36.3
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-06 54.7 91 38.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 4.4e-06 54.7 90 35.6
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.4e-06 54.7 38 60.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.8e-06 54.3 60 41.7
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.8e-06 54.3 46 52.2
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.8e-06 54.3 83 38.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 5.8e-06 54.3 99 38.4
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.8e-06 54.3 88 34.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 7.6e-06 53.9 88 43.2
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.6e-06 53.9 92 38.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.6e-06 53.9 89 38.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.6e-06 53.9 81 39.5
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.6e-06 53.9 91 35.2
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 9.9e-06 53.5 44 56.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 9.9e-06 53.5 38 60.5
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 100 37.0
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.9e-06 53.5 91 40.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.9e-06 53.5 96 37.5
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 98 36.7
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.9e-06 53.5 40 62.5


User provided reference genes

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