Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 2.7e-132 475.3 236 100.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 5.1e-131 471.1 236 98.7
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.2e-129 466.5 236 97.5
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.4e-111 405.2 242 84.7
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 4.4e-111 404.8 242 84.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 7.6e-95 350.9 234 71.4
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 8.4e-94 347.4 218 74.3
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.1e-92 342.8 210 78.6
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.9e-91 338.6 233 69.5
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 8.7e-91 337.4 216 74.5
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.5e-90 336.7 239 68.2
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 5.7e-90 334.7 238 70.2
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 9.6e-90 334.0 234 70.5
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 3.7e-89 332.0 217 72.4
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 8.2e-89 330.9 238 68.9
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 8.2e-89 330.9 238 68.9
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.1e-88 330.5 220 70.9
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 5.3e-88 328.2 242 68.2
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 5.3e-88 328.2 216 71.3
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 6.9e-88 327.8 220 70.9
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 9.0e-88 327.4 217 72.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.2e-87 327.0 219 72.6
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.6e-87 325.9 221 70.1
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 3.4e-87 325.5 220 70.9
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 3.4e-87 325.5 214 72.9
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 4.5e-87 325.1 241 67.6
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.0e-86 323.9 216 71.3
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 1.7e-86 323.2 218 72.5
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 1.7e-86 323.2 211 73.0
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 2.2e-86 322.8 217 71.0
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.2e-86 322.8 217 71.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 5.0e-86 321.6 223 71.3
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 5.0e-86 321.6 233 73.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 6.5e-86 321.2 219 74.0
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 6.5e-86 321.2 217 71.0
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 8.4e-86 320.9 241 66.4
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.1e-85 320.5 231 67.1
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.4e-85 320.1 235 68.9
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 3.2e-85 318.9 239 66.9
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 4.2e-85 318.5 210 72.9
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.2e-85 318.5 239 65.7
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 7.1e-85 317.8 243 66.3
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-84 315.5 216 69.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-84 315.5 216 69.4
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 4.6e-84 315.1 220 67.3
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 4.6e-84 315.1 220 69.1
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.8e-83 313.2 213 73.7
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 2.3e-83 312.8 226 66.8
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 3.9e-83 312.0 234 66.7
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 6.7e-83 311.2 225 68.4
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 8.7e-83 310.8 225 68.0
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.1e-82 310.5 225 68.0
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 5.7e-82 308.1 215 68.8
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 7.4e-82 307.8 218 68.8
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.4e-82 307.8 225 67.1
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 9.7e-82 307.4 207 69.6
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.2e-81 306.2 234 65.0
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 2.8e-81 305.8 217 66.4
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 3.7e-81 305.4 221 67.0
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 6.3e-81 304.7 217 65.9
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 8.2e-81 304.3 237 67.1
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.4e-80 303.5 215 69.3
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.4e-80 302.8 239 64.4
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.5e-79 300.1 220 68.2
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.0e-79 299.7 216 66.7
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 3.4e-79 298.9 217 67.3
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.2e-78 296.2 213 68.5
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 5.0e-78 295.0 223 66.8
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 5.0e-78 295.0 223 65.9
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 8.5e-78 294.3 235 63.0
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 1.1e-77 293.9 216 66.2
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.5e-77 292.7 215 67.9
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.2e-77 292.4 225 63.6
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 4.2e-77 292.0 222 63.1
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 2.7e-76 289.3 219 65.3
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 3.6e-76 288.9 223 65.5
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 3.6e-76 288.9 223 65.9
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 6.1e-76 288.1 223 65.5
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.8e-75 286.6 223 65.0
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.8e-75 286.6 221 63.8
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 6.7e-75 284.6 220 63.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 4.3e-74 282.0 220 63.2
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 7.4e-74 281.2 224 62.5
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 1.3e-73 280.4 214 65.0
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 6.3e-73 278.1 242 57.9
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 8.2e-73 277.7 216 64.8
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 2.2e-70 269.6 221 62.9
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 5.0e-70 268.5 221 62.4
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 7.2e-69 264.6 218 61.0
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 2.1e-68 263.1 213 60.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 5.7e-66 255.0 220 61.4
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.4e-66 254.6 131 90.8
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.2e-65 253.1 258 53.5
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.3e-64 248.4 241 54.8
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.1e-60 236.5 236 50.8
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 2.7e-60 236.1 179 67.0
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.5e-58 230.3 225 51.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.9e-54 216.1 129 76.7
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 3.8e-54 215.7 175 61.7
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 4.7e-52 208.8 172 61.0
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.3e-51 206.5 124 73.4
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.0e-51 205.7 160 63.8
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.2e-51 205.3 124 72.6
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.6e-47 193.7 167 59.3
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.5e-47 192.2 166 59.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.2e-44 184.1 181 56.9
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 5.7e-42 175.3 147 59.9
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.1e-40 169.5 125 63.2
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 7.0e-40 168.3 253 36.4
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.6e-39 167.2 104 74.0
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 3.8e-38 162.5 143 55.2
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 6.6e-38 161.8 133 56.4
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 4.3e-37 159.1 135 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.9e-33 146.4 143 47.6
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 9.2e-32 141.4 113 59.3
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.8e-27 127.1 76 76.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.0e-26 123.6 76 72.4
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.0e-26 123.6 76 73.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.6e-26 123.2 75 76.0
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 4.4e-26 122.5 116 55.2
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.8e-26 122.1 76 75.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.8e-26 121.3 76 73.7
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.8e-26 121.3 76 73.7
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-25 120.6 75 74.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-25 120.6 75 74.7
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.7e-25 120.6 68 76.5
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 4.9e-25 119.0 117 53.8
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-21 107.8 66 69.7
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.5e-21 107.5 106 52.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 2.1e-20 103.6 89 58.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-16 90.5 64 65.6
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-16 90.1 58 62.1
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.2e-15 87.8 83 50.6
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.1e-15 87.0 75 56.0
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.5e-15 86.3 82 57.3
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 6.0e-15 85.5 102 50.0
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 7.8e-15 85.1 55 65.5
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 3.9e-14 82.8 143 34.3
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.6e-14 82.0 42 83.3
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-12 77.8 51 68.6
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-12 75.9 166 26.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 6.2e-12 75.5 175 33.1
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 3.1e-11 73.2 70 52.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 4.0e-11 72.8 171 26.9
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 8.9e-11 71.6 163 26.4
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.3e-09 67.8 169 24.9
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.9e-09 66.6 170 24.1
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 4.1e-08 62.8 130 29.2
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.5e-07 59.7 206 21.8
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.3e-06 57.0 34 64.7


User provided reference genes

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