Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 1.3e-79 299.7 158 100.0
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 5.9e-75 284.3 158 94.9
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 5.9e-75 284.3 158 94.3
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.7e-61 239.6 156 84.0
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.5e-54 216.5 136 80.9
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 3.5e-51 205.3 139 77.7
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.9e-49 199.5 162 72.8
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 8.5e-42 174.1 164 60.4
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 7.2e-41 171.0 176 56.8
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 5.2e-39 164.9 122 76.2
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 2.6e-38 162.5 166 57.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 3.7e-37 158.7 128 68.8
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.9e-37 158.3 145 61.4
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 6.3e-37 157.9 131 67.9
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 4.1e-36 155.2 124 65.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 5.4e-36 154.8 154 57.1
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 9.2e-36 154.1 160 58.8
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.5e-35 152.1 111 72.1
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 7.7e-35 151.0 82 87.8
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 7.7e-35 151.0 112 69.6
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 7.7e-35 151.0 122 69.7
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.0e-34 150.6 120 69.2
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.3e-34 150.2 84 81.0
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.3e-34 150.2 150 56.7
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.3e-34 149.4 122 67.2
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.9e-34 149.1 87 78.2
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 8.6e-34 147.5 113 69.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 8.6e-34 147.5 100 78.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 1.5e-33 146.7 127 60.6
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 4.3e-33 145.2 164 54.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 4.3e-33 145.2 135 60.7
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 7.3e-33 144.4 162 58.6
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 9.5e-33 144.1 100 76.0
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 1.2e-32 143.7 111 66.7
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.1e-32 142.9 84 77.4
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 6.1e-32 141.4 85 76.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 8.0e-32 141.0 144 55.6
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 8.0e-32 141.0 160 52.5
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 8.0e-32 141.0 83 77.1
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.0e-31 140.6 165 54.5
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 1.0e-31 140.6 113 65.5
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.8e-31 139.8 88 73.9
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 3.0e-31 139.0 100 64.0
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 4.0e-31 138.7 134 60.4
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 5.2e-31 138.3 94 71.3
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 8.9e-31 137.5 114 68.4
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.2e-30 137.1 73 82.2
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.0e-30 136.3 124 56.5
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.6e-30 136.0 163 51.5
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.6e-30 136.0 165 53.3
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 3.4e-30 135.6 97 68.0
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 3.4e-30 135.6 113 69.0
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 4.4e-30 135.2 104 72.1
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 4.4e-30 135.2 109 68.8
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 4.4e-30 135.2 85 74.1
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 4.4e-30 135.2 95 74.7
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 5.7e-30 134.8 136 52.2
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 7.5e-30 134.4 85 71.8
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 9.8e-30 134.0 85 72.9
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 9.8e-30 134.0 95 73.7
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.3e-29 133.7 139 59.0
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.3e-29 133.7 96 70.8
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.3e-29 133.7 92 66.3
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 1.7e-29 133.3 113 66.4
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.7e-29 133.3 126 56.3
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 2.2e-29 132.9 104 69.2
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 2.2e-29 132.9 104 69.2
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.2e-29 132.9 84 75.0
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.2e-29 132.9 164 50.6
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 2.9e-29 132.5 81 77.8
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 2.9e-29 132.5 100 71.0
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.7e-29 132.1 167 50.9
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 4.9e-29 131.7 138 57.2
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 6.4e-29 131.3 92 76.1
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 6.4e-29 131.3 121 62.0
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.4e-28 130.2 127 58.3
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.8e-28 129.8 98 63.3
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.8e-28 129.8 104 69.2
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.8e-28 129.8 81 72.8
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.8e-28 129.8 140 57.9
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.8e-28 129.8 103 68.0
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.8e-28 129.8 104 70.2
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.4e-28 129.4 101 70.3
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 2.4e-28 129.4 119 58.8
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 3.2e-28 129.0 81 74.1
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.2e-28 129.0 104 69.2
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 4.1e-28 128.6 109 65.1
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 4.1e-28 128.6 120 60.8
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.4e-28 128.3 80 72.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 7.0e-28 127.9 80 72.5
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 9.2e-28 127.5 80 72.5
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.6e-27 126.7 116 62.1
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 2.7e-27 125.9 112 58.0
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 3.5e-27 125.6 81 70.4
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 4.6e-27 125.2 100 68.0
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 4.6e-27 125.2 127 58.3
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 5.9e-27 124.8 154 50.6
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 7.8e-27 124.4 100 67.0
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 7.8e-27 124.4 126 59.5
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.0e-26 124.0 100 67.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.0e-26 124.0 76 75.0
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.0e-26 124.0 81 72.8
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.3e-26 123.6 100 68.0
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.3e-26 123.6 100 68.0
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.3e-26 123.6 100 68.0
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.3e-26 123.6 100 68.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.3e-26 123.6 94 74.5
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.3e-26 123.6 122 54.9
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 5.0e-26 121.7 101 58.4
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-25 120.6 101 61.4
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-25 120.2 143 47.6
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 2.5e-25 119.4 85 63.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 4.3e-25 118.6 141 51.1
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.6e-25 118.2 143 48.3
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.1e-24 116.3 134 46.3
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 8.9e-23 110.9 80 63.8
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.2e-22 110.5 80 58.8
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 2.2e-21 106.3 68 75.0
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 6.4e-21 104.8 116 52.6
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 7.0e-20 101.3 85 70.6
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 7.0e-20 101.3 78 59.0
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.6e-19 100.1 99 53.5
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.7e-19 99.4 81 65.4
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.1e-17 94.0 120 45.8
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 5.6e-17 91.7 56 71.4
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.5e-14 83.6 58 62.1
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-14 83.6 59 62.7
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-14 83.6 59 62.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 3.4e-14 82.4 64 70.3
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 1.4e-12 77.0 55 61.8
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 1.4e-12 77.0 55 61.8
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.3e-10 70.5 44 72.7
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 4.3e-09 65.5 51 58.8
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 4.4e-06 55.5 102 36.3


User provided reference genes

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