Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 9.3e-56 219.9 108 100.0
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.7e-49 199.1 108 89.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 4.3e-45 184.5 108 79.6
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 2.1e-44 182.2 108 78.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 2.8e-44 181.8 90 97.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.2e-42 176.4 108 76.9
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.4e-42 174.9 104 77.9
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.5e-42 174.5 109 76.1
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 5.8e-42 174.1 108 75.0
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.3e-41 172.9 108 74.1
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.9e-41 171.8 97 89.7
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 4.9e-41 171.0 108 74.1
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 6.5e-41 170.6 108 73.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.5e-40 168.7 109 76.1
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 4.2e-40 167.9 109 74.3
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 5.5e-40 167.5 108 71.3
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.2e-39 166.4 108 73.1
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.2e-39 166.4 108 73.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 74.1
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.5e-39 164.9 108 72.2
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.5e-39 164.9 108 72.2
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 6.0e-39 164.1 108 69.4
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.0e-39 164.1 108 72.2
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 7.9e-39 163.7 108 71.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.9e-38 161.4 108 70.4
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 69.4
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.7e-38 160.2 108 68.5
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 3.3e-37 158.3 109 69.7
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 4.3e-37 157.9 109 68.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.7e-37 157.5 108 68.5
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 7.4e-37 157.1 108 69.4
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.3e-36 156.4 109 67.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.6e-36 156.0 108 66.7
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.2e-36 155.6 108 67.6
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.8e-36 155.2 109 68.8
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 67.6
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.8e-36 155.2 86 91.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.8e-36 155.2 108 66.7
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 4.8e-36 154.5 108 66.7
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 6.3e-36 154.1 109 69.7
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 6.3e-36 154.1 108 66.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.2e-36 153.7 86 90.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.4e-35 152.9 109 67.0
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 64.8
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 64.8
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 67.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 68.5
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 68.5
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 66.7
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 4.1e-35 151.4 109 67.0
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 9.0e-35 150.2 109 66.1
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 9.0e-35 150.2 108 64.8
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 68.8
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 67.0
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-34 149.8 109 67.0
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 63.9
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 64.8
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 64.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 63.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.4e-34 148.3 108 63.0
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 63.6
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 4.5e-34 147.9 108 63.0
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.5e-34 147.9 108 63.0
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 5.9e-34 147.5 108 63.9
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 5.9e-34 147.5 110 64.5
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 1.3e-33 146.4 109 61.5
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-33 146.0 109 66.1
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.9e-33 145.2 108 62.0
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.8e-33 144.8 109 62.4
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 6.5e-33 144.1 108 64.8
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 61.1
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 61.1
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 8.5e-33 143.7 108 62.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 63.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 60.2
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 60.2
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 60.2
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 63.3
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.9e-32 142.5 109 63.3
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.5e-32 142.1 108 60.2
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.2e-32 141.4 109 62.4
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.3e-32 140.2 108 61.1
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 9.3e-32 140.2 101 70.3
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 60.7
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 61.1
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.7e-31 138.7 104 63.5
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.7e-31 138.7 85 81.2
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.6e-31 137.9 109 61.5
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 4.6e-31 137.9 109 60.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 6.1e-31 137.5 108 60.2
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 6.1e-31 137.5 108 61.1
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 59.3
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 58.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.4e-30 136.3 108 60.2
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.4e-30 136.3 90 75.6
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.8e-30 136.0 109 60.6
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 59.3
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 57.4
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 58.3
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 3.9e-30 134.8 88 75.0
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.1e-30 134.4 109 60.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 5.1e-30 134.4 108 57.4
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.7e-30 134.0 108 57.4
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 8.8e-30 133.7 108 57.4
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-29 133.3 110 58.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.5e-29 132.9 112 57.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 56.5
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 57.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.7e-29 131.0 84 77.4
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.7e-29 130.2 108 58.3
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.2e-28 129.0 95 63.2
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 54.6
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 54.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 4.8e-28 127.9 99 60.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 2.4e-27 125.6 109 56.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.1e-27 125.2 92 66.3
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 5.3e-27 124.4 109 57.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.9e-27 124.0 109 57.8
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 6.9e-27 124.0 109 57.8
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 58.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.0e-26 122.5 85 69.4
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.0e-26 122.5 109 56.9
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.6e-26 122.1 87 70.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.0e-25 120.2 109 56.9
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.2e-25 119.0 89 64.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.9e-25 118.6 87 67.8
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 5.0e-25 117.9 84 66.7
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 5.0e-25 117.9 84 66.7
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 5.0e-25 117.9 97 60.8
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 5.0e-25 117.9 72 70.8
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 6.5e-25 117.5 108 53.7
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.5e-24 115.5 108 49.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.2e-24 114.8 87 59.8
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.2e-23 113.2 109 51.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.6e-23 112.8 66 87.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 3.9e-22 108.2 97 58.8
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.1e-21 106.7 85 58.8
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.1e-21 106.7 108 46.3
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.4e-21 104.8 85 58.8
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 9.7e-21 103.6 88 52.3
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.8e-20 102.1 88 58.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.8e-20 102.1 108 42.6
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.1e-19 98.2 91 54.9
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 6.9e-19 97.4 74 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.9e-18 94.4 110 43.6
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.3e-17 93.2 110 43.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.9e-17 92.0 88 53.4
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 6.5e-17 90.9 110 43.6
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.1e-15 85.9 109 42.2
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.8e-14 82.8 86 53.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.8e-14 82.8 83 47.0
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.3e-13 78.6 61 63.9
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.1e-11 73.6 81 45.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 2.6e-10 68.9 111 39.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 5.9e-10 67.8 109 35.8
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.9e-09 65.5 110 35.5
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 8.0e-07 57.4 41 65.9


User provided reference genes

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