Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.1e-46 189.5 90 100.0
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.2e-45 186.0 90 97.8
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 8.9e-28 126.7 89 66.3
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 8.9e-28 126.7 89 66.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.3e-26 122.9 89 65.2
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 6.4e-26 120.6 91 64.8
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.2e-24 116.3 92 62.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.2e-24 116.3 90 57.8
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.7e-24 115.2 84 61.9
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 2.7e-24 115.2 87 64.4
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 1.0e-23 113.2 92 56.5
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 1.0e-23 113.2 89 60.7
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.0e-23 113.2 92 57.6
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.3e-23 112.8 93 62.4
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.3e-23 112.1 82 64.6
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 3.9e-23 111.3 89 58.4
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 5.1e-23 110.9 89 61.8
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 8.6e-23 110.2 93 60.2
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.1e-22 109.8 94 61.7
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.9e-22 109.0 89 58.4
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.3e-22 107.1 83 57.8
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 9.5e-22 106.7 87 57.5
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 9.5e-22 106.7 87 58.6
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.2e-21 106.3 93 55.9
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 1.6e-21 105.9 92 57.6
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 2.1e-21 105.5 87 60.9
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 3.6e-21 104.8 90 53.3
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 3.6e-21 104.8 90 53.3
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.7e-21 104.4 89 52.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 4.7e-21 104.4 95 53.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 6.2e-21 104.0 89 56.2
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 8.1e-21 103.6 92 56.5
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 2.4e-20 102.1 91 54.9
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 3.1e-20 101.7 75 62.7
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.5e-19 99.4 89 55.1
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 2.0e-19 99.0 90 56.7
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 4.4e-19 97.8 95 53.7
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 5.8e-19 97.4 92 54.3
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 7.6e-19 97.1 71 62.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.7e-18 95.9 92 52.2
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.9e-18 95.1 56 80.4
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 3.8e-18 94.7 70 61.4
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 4.9e-18 94.4 64 65.6
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 6.4e-18 94.0 87 52.9
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 8.4e-18 93.6 90 53.3
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 3.2e-17 91.7 81 55.6
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 4.2e-17 91.3 94 54.3
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 5.4e-17 90.9 95 52.6
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.6e-16 89.4 89 51.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.1e-16 89.0 84 53.6
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.3e-15 86.3 93 49.5
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 2.3e-15 85.5 93 48.4
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 2.3e-15 85.5 61 68.9
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 2.3e-15 85.5 55 67.3
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 3.0e-15 85.1 97 47.4
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 8.7e-15 83.6 51 72.5
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.1e-14 83.2 60 65.0
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 4.7e-13 77.8 92 48.9
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 5.3e-12 74.3 92 45.7
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.2e-11 73.2 92 44.6
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.2e-11 73.2 92 44.6
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.5e-11 72.8 92 44.6
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.5e-11 72.8 92 44.6
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 2.6e-11 72.0 92 44.6
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 2.6e-11 72.0 92 44.6
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 2.6e-11 72.0 84 48.8
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 2.6e-11 72.0 80 55.0
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 4.4e-11 71.2 92 45.7
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 4.4e-11 71.2 92 44.6
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 4.4e-11 71.2 92 46.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.3e-10 69.7 92 46.7
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 1.7e-10 69.3 82 50.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 3.8e-10 68.2 84 46.4
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.4e-09 65.5 57 54.4
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 9.3e-09 63.5 44 61.4
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 9.3e-09 63.5 44 61.4
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 2.1e-08 62.4 76 43.4
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 5.1e-07 57.8 98 38.8
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 5.1e-07 57.8 38 63.2
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 2.5e-06 55.5 34 67.6
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 9.6e-06 53.5 34 67.6


User provided reference genes

Program Settings