Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.9e-136 489.2 256 100.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.2e-133 479.9 256 98.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.8e-132 474.9 256 96.9
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 7.5e-104 380.9 257 81.7
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.9e-92 342.4 256 73.0
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.6e-92 341.3 256 72.7
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 9.5e-83 310.8 262 67.9
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.4e-78 295.0 262 66.4
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 6.8e-73 278.1 264 62.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.8e-65 253.4 262 61.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.7e-63 245.7 261 59.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 7.1e-62 241.5 283 55.8
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.8e-61 238.0 269 56.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.8e-58 229.6 268 55.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-57 227.6 272 55.1
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.1e-54 217.6 259 54.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.4e-54 216.5 265 54.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-52 210.7 267 52.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.7e-52 210.3 273 54.6
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.9e-52 209.1 264 51.5
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.9e-52 209.1 267 53.6
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 5.1e-52 208.8 266 51.5
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 8.7e-52 208.0 266 54.1
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 8.7e-52 208.0 264 52.3
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.9e-51 206.8 268 53.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.3e-51 205.7 293 49.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.6e-50 203.8 265 52.5
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.8e-49 200.3 268 49.6
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.1e-49 199.5 260 52.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 4.0e-49 199.1 282 50.7
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.9e-49 198.4 159 67.9
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.5e-48 197.2 264 52.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.5e-48 197.2 279 50.5
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 9.9e-48 194.5 267 49.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-47 194.1 271 50.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.2e-47 193.4 265 52.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 4.9e-47 192.2 268 52.2
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 8.4e-47 191.4 269 52.0
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 8.4e-47 191.4 273 52.4
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.4e-46 190.7 267 51.7
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.9e-46 190.3 265 52.1
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 9.3e-46 188.0 261 50.6
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.2e-45 187.6 265 49.8
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 2.1e-45 186.8 250 53.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 6.0e-45 185.3 268 48.5
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.0e-44 184.5 313 45.7
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.0e-44 183.0 265 49.4
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.0e-44 183.0 266 50.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.9e-44 182.6 266 49.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 8.7e-44 181.4 261 48.3
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-43 181.0 207 55.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.9e-43 180.3 263 49.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.5e-43 179.9 238 52.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.3e-43 179.1 249 50.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.3e-43 179.1 266 49.6
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.6e-43 178.7 270 50.0
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 7.3e-43 178.3 284 46.5
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 7.3e-43 178.3 266 47.7
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.3e-42 177.6 264 48.1
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.8e-42 176.4 267 46.4
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 3.6e-42 176.0 268 47.4
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 8.1e-42 174.9 266 48.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.4e-41 174.1 321 43.3
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.8e-41 173.7 266 48.5
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.4e-41 173.3 263 47.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.1e-41 172.9 267 46.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.1e-41 172.9 265 49.4
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 6.9e-41 171.8 260 47.3
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 6.9e-41 171.8 265 49.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-40 170.6 268 45.9
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.6e-40 169.9 266 49.2
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 5.8e-40 168.7 274 46.4
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 5.8e-40 168.7 270 47.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 7.6e-40 168.3 274 46.4
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.7e-39 167.2 262 47.3
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.8e-39 166.0 269 45.4
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 8.4e-39 164.9 262 47.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.4e-38 163.3 247 47.0
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.2e-38 162.9 269 43.9
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 7.1e-38 161.8 253 47.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.7e-37 159.8 261 46.7
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.7e-37 159.8 261 46.7
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.7e-37 159.8 262 43.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 7.9e-37 158.3 276 44.2
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.0e-36 156.4 274 45.3
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 8.7e-36 154.8 258 43.8
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.9e-35 153.7 259 44.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-35 153.7 259 44.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.5e-35 153.3 270 43.7
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.5e-35 153.3 261 42.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 3.3e-35 152.9 262 45.8
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.3e-35 152.5 260 45.0
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.3e-35 152.5 259 44.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.3e-35 152.5 259 44.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.6e-35 152.1 268 44.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 9.6e-35 151.4 271 42.4
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 9.6e-35 151.4 261 42.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-34 151.0 265 46.0
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-34 150.2 271 44.3
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.1e-34 150.2 256 46.5
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.8e-34 149.8 206 47.1
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 3.7e-34 149.4 262 42.7
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.8e-34 149.1 259 45.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-33 147.9 256 44.1
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 5.3e-33 145.6 259 44.0
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 5.3e-33 145.6 265 45.3
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.0e-33 144.8 190 50.0
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.0e-32 143.7 260 43.1
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.0e-32 143.7 268 44.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.0e-32 143.7 268 43.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.0e-32 143.7 270 46.7
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-32 143.7 271 43.2
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 9.9e-32 141.4 260 42.3
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-31 141.0 244 43.4
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.3e-31 141.0 188 51.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.3e-31 141.0 187 51.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.2e-31 140.2 257 44.4
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.2e-31 140.2 267 40.4
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.9e-31 139.8 261 43.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.8e-31 139.4 272 42.3
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.9e-30 137.1 269 42.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.9e-30 137.1 267 38.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 3.2e-30 136.3 256 41.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 5.5e-30 135.6 263 43.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 5.5e-30 135.6 263 43.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-30 135.2 262 42.7
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.1e-30 135.2 264 40.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-29 134.4 262 40.8
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.2e-29 134.4 267 42.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.7e-29 133.3 190 46.3
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.7e-29 133.3 267 40.8
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-29 132.5 158 53.2
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.6e-29 132.5 286 40.2
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 7.9e-29 131.7 261 40.6
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-28 131.3 258 40.7
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.0e-28 131.3 258 40.7
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 1.8e-28 130.6 287 40.1
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-28 130.2 260 42.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 6.7e-28 128.6 262 38.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 4.3e-27 125.9 194 45.9
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.3e-26 124.4 207 45.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 4.8e-26 122.5 262 40.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.4e-25 120.9 173 48.0
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-25 120.6 268 39.6
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 5.3e-25 119.0 267 39.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.4e-24 116.3 259 39.0
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.6e-24 115.2 210 43.3
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-23 114.4 203 44.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 4.9e-23 112.5 132 50.8
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 6.5e-23 112.1 208 40.9
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.9e-22 110.5 264 36.7
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.1e-22 108.6 266 38.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.0e-20 104.8 256 34.0
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.0e-20 104.8 259 39.0
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.0e-20 104.8 255 35.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.7e-20 102.1 121 52.9
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 8.7e-20 101.7 169 42.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.1e-19 101.3 256 36.7
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.3e-19 99.8 256 34.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 9.7e-19 98.2 267 38.2
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.8e-18 96.7 363 28.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 6.9e-17 92.0 257 34.6
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-16 91.3 259 35.1
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.5e-16 90.9 260 35.4
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.4e-16 89.7 244 34.4
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.9e-15 86.7 255 37.3
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 8.5e-15 85.1 261 32.6
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.0e-12 78.2 120 40.8
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.4e-12 77.8 153 42.5
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 8.8e-12 75.1 210 35.2
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.3e-11 73.2 71 59.2
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 5.7e-11 72.4 238 31.5
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.7e-11 71.6 73 56.2
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 3.1e-09 66.6 63 57.1
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.2e-08 64.7 228 31.6
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-08 63.5 168 31.5
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 1.3e-07 61.2 225 29.8
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.2e-07 60.5 102 44.1
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 1.1e-06 58.2 170 29.4
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.1e-06 58.2 216 30.6
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-06 57.8 72 48.6
Zm00001eb245720 Zea mays HOM05D020767 ORTHO05D003885 3.2e-06 56.6 226 33.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 5.5e-06 55.8 226 28.3
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 7.2e-06 55.5 73 46.6
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 9.4e-06 55.1 75 41.3


User provided reference genes

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