Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 2.8e-121 439.9 220 100.0
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 4.6e-116 422.5 219 96.3
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 3.3e-90 336.7 220 77.3
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 6.2e-81 305.8 190 81.6
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 7.6e-79 298.9 197 76.6
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 1.1e-69 268.5 155 83.2
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.0e-38 163.3 140 57.1
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 6.1e-36 156.4 209 45.5
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 6.1e-36 156.4 186 47.3
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 8.8e-35 152.5 139 56.8
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.2e-33 147.9 221 40.7
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 2.2e-33 147.9 142 54.2
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.1e-32 145.6 143 53.1
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 2.4e-32 144.4 116 59.5
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.0e-30 139.0 121 57.0
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 2.9e-30 137.5 173 46.2
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 4.2e-29 133.7 167 47.9
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 1.4e-27 128.6 167 44.9
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 5.2e-27 126.7 169 43.2
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 5.2e-27 126.7 114 57.0
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 1.5e-26 125.2 166 47.0
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 7.5e-26 122.9 114 56.1
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 7.8e-23 112.8 118 51.7
Solyc10g080330.2 Solanum lycopersicum HOM05D007456 ORTHO05D009411 1.5e-21 108.6 218 35.8
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 7.3e-21 106.3 158 44.9
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.6e-20 105.1 172 41.3
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.0e-19 102.4 110 49.1
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 1.0e-19 102.4 79 65.8
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 2.6e-18 97.8 117 49.6
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 5.8e-18 96.7 125 46.4
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 7.5e-18 96.3 122 46.7
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 1.3e-17 95.5 118 46.6
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 1.3e-17 95.5 116 46.6
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 1.7e-17 95.1 125 46.4
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 1.7e-17 95.1 122 41.8
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 2.9e-17 94.4 119 46.2
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 1.1e-16 92.4 123 45.5
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.4e-16 92.0 135 38.5
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 2.4e-16 91.3 125 44.8
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 3.2e-16 90.9 79 57.0
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 4.1e-16 90.5 138 40.6
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 5.4e-16 90.1 86 57.0
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 5.4e-16 90.1 117 41.9
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 1.2e-15 89.0 121 44.6
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 1.2e-15 89.0 121 44.6
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 3.9e-14 84.0 116 40.5
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 3.9e-14 84.0 115 40.0
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 3.9e-14 84.0 62 59.7
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 3.9e-14 84.0 62 59.7
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 8.6e-14 82.8 123 38.2
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 1.1e-13 82.4 72 56.9
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 1.5e-13 82.0 65 60.0
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.3e-13 80.9 87 54.0
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.3e-13 80.5 116 44.8
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 4.3e-13 80.5 63 61.9
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 5.6e-13 80.1 64 60.9
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.6e-13 80.1 116 44.8
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 7.3e-13 79.7 137 36.5
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 7.3e-13 79.7 64 64.1
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 7.3e-13 79.7 166 38.0
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.2e-12 79.0 85 48.2
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 2.1e-12 78.2 118 39.8
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.1e-12 78.2 76 52.6
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 6.2e-12 76.6 55 61.8
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 1.4e-11 75.5 110 40.9
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 6.8e-11 73.2 64 60.9
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 1.2e-10 72.4 53 62.3
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.4e-10 70.5 140 32.9
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 3.7e-09 67.4 106 35.8
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 3.7e-09 67.4 92 43.5
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 3.7e-09 67.4 146 35.6
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 8.3e-09 66.2 122 29.5
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 8.3e-09 66.2 61 54.1
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 1.9e-08 65.1 102 42.2
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 7.0e-08 63.2 60 55.0
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.2e-07 62.4 142 28.9
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.6e-07 62.0 49 63.3
ECA232G3382 Erigeron canadensis HOM05D007456 ORTHO05D009411 2.1e-07 61.6 50 60.0
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 3.5e-07 60.8 49 61.2
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 3.5e-07 60.8 48 60.4
CANSAT54G1256 Cannabis sativa HOM05D007456 ORTHO05D028426 4.6e-07 60.5 112 36.6
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 7.8e-07 59.7 115 29.6
A07p26530 Brassica napus HOM05D000891 ORTHO05D000761 7.8e-07 59.7 117 27.4
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 7.8e-07 59.7 52 53.8
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.0e-06 59.3 85 35.3
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 1.0e-06 59.3 117 27.4
BcaB02g07294 Brassica carinata HOM05D000891 ORTHO05D000761 1.7e-06 58.5 117 26.5
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 1.7e-06 58.5 78 41.0
Hund09765 Selenicereus undatus HOM05D007456 ORTHO05D009411 2.3e-06 58.2 150 26.7
Sp5g35650 Schrenkiella parvula HOM05D000891 ORTHO05D000761 3.9e-06 57.4 125 25.6
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 6.6e-06 56.6 132 32.6
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 6.6e-06 56.6 78 39.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 6.6e-06 56.6 103 35.0
EL10Ac1g00453 Beta vulgaris HOM05D000001 ORTHO05D010175 8.6e-06 56.2 122 32.8


User provided reference genes

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