Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.3e-88 330.5 292 100.0
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 6.6e-72 275.0 296 86.1
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.2e-50 203.0 301 70.1
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 2.5e-47 193.4 270 74.4
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.6e-47 191.4 271 74.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.1e-46 190.3 133 94.0
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-41 174.5 275 69.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.7e-41 173.3 260 66.5
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.0e-40 171.4 275 69.5
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.9e-40 169.5 263 66.9
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 3.9e-40 169.5 262 69.5
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.1e-40 169.1 275 69.5
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 6.6e-40 168.7 260 69.2
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.1e-39 167.9 260 67.7
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.9e-39 167.2 272 70.6
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.9e-39 167.2 272 70.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.3e-39 166.4 273 65.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 7.3e-39 165.2 275 64.4
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.1e-38 163.7 251 68.9
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 3.6e-38 162.9 262 65.3
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 4.8e-38 162.5 262 65.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.8e-38 162.5 263 67.3
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.8e-38 162.5 266 66.9
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.1e-38 161.8 275 66.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 8.1e-38 161.8 274 63.5
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 4.0e-37 159.5 279 62.4
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.0e-37 159.5 262 63.7
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 6.9e-37 158.7 263 63.1
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.2e-36 157.9 264 67.0
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.2e-36 157.9 275 66.2
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.6e-36 156.8 264 63.6
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.4e-36 156.4 262 66.0
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 5.8e-36 155.6 264 67.4
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 7.6e-36 155.2 270 65.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.9e-35 152.5 268 53.4
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 6.4e-35 152.1 264 67.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.4e-34 151.0 268 69.4
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.4e-34 151.0 263 65.4
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.4e-34 150.2 271 63.5
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.2e-34 149.4 265 68.3
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.4e-34 149.1 264 62.9
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 9.3e-34 148.3 272 63.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 9.3e-34 148.3 272 63.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.2e-33 147.9 259 68.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.2e-33 147.9 264 64.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 3.5e-33 146.4 254 64.6
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 6.0e-33 145.6 276 64.5
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 7.9e-33 145.2 265 63.0
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.3e-32 144.4 186 55.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.8e-32 144.1 315 57.8
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.8e-32 144.1 265 64.2
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-32 144.1 271 61.6
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.3e-32 143.7 272 62.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.0e-32 143.3 182 57.7
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.9e-32 142.9 264 51.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 3.9e-32 142.9 264 63.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 3.9e-32 142.9 263 52.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 5.1e-32 142.5 260 64.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.1e-32 142.5 267 62.2
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 6.7e-32 142.1 264 63.3
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 8.7e-32 141.7 269 63.6
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.1e-31 141.4 264 63.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.9e-31 140.6 262 63.4
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 273 64.1
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.3e-31 139.4 262 61.1
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 9.6e-31 138.3 264 62.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.3e-30 137.9 265 61.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.6e-30 137.5 262 64.1
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.6e-30 137.5 294 60.2
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.8e-30 136.7 257 63.4
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 8.1e-30 135.2 268 60.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 8.1e-30 135.2 275 64.4
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 8.1e-30 135.2 178 53.4
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 8.1e-30 135.2 289 58.1
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 8.1e-30 135.2 264 67.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.8e-29 134.0 189 52.4
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.4e-29 133.7 174 52.9
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.1e-29 133.3 266 63.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 4.0e-29 132.9 264 68.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.3e-29 132.5 186 52.2
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.3e-29 132.5 261 67.4
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.9e-29 132.1 306 58.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 9.0e-29 131.7 270 62.6
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 9.0e-29 131.7 260 61.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 3.4e-28 129.8 264 61.4
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 7.6e-28 128.6 276 60.9
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.7e-27 127.5 274 62.8
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.7e-27 127.5 306 61.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.4e-26 124.4 206 44.2
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.4e-26 124.4 258 66.3
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 2.4e-26 123.6 272 65.8
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.2e-26 123.2 267 58.8
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.2e-26 123.2 265 56.6
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.2e-26 123.2 175 50.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.2e-26 123.2 276 59.4
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.2e-26 122.9 180 52.2
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 5.5e-26 122.5 273 64.1
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 7.1e-26 122.1 274 57.3
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.3e-26 121.7 273 64.8
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.6e-25 120.9 182 56.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 2.1e-25 120.6 263 57.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.7e-25 120.2 263 64.6
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.0e-25 119.0 264 48.1
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.0e-25 119.0 264 48.1
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.0e-24 118.2 199 45.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 1.0e-24 118.2 264 63.6
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.0e-24 118.2 267 59.9
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.0e-24 118.2 175 46.9
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.0e-24 116.7 270 56.7
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.0e-24 116.7 276 47.5
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.9e-24 116.3 280 64.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 5.1e-24 115.9 264 55.7
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 5.1e-24 115.9 264 55.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 6.7e-24 115.5 259 59.5
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.7e-24 115.2 266 53.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 4.3e-23 112.8 276 58.0
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 5.6e-23 112.5 270 55.9
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 9.6e-23 111.7 276 56.2
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 9.6e-23 111.7 276 56.2
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 9.6e-23 111.7 276 56.2
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 9.6e-23 111.7 268 64.2
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.3e-22 111.3 274 58.0
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.6e-22 110.9 269 55.4
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.6e-22 110.9 225 72.4
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.6e-22 110.9 154 51.9
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.8e-22 110.2 292 61.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 3.7e-22 109.8 298 57.7
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.7e-22 109.8 182 53.3
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.8e-22 109.4 260 54.2
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 4.8e-22 109.4 267 56.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 6.2e-22 109.0 272 55.9
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 6.2e-22 109.0 220 40.9
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.1e-21 108.2 276 58.3
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.8e-21 107.5 277 58.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.8e-21 107.5 282 40.4
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.0e-21 106.3 270 56.3
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.0e-21 106.3 280 57.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.3e-21 105.9 262 48.5
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 5.3e-21 105.9 328 57.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.0e-20 104.0 276 57.2
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.7e-19 100.9 261 56.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.9e-19 99.4 259 35.5
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 6.5e-19 99.0 258 56.6
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 1.9e-18 97.4 266 56.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.5e-18 97.1 265 61.1
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 7.1e-18 95.5 255 63.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 7.1e-18 95.5 179 39.1
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 7.1e-18 95.5 260 47.3
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.0e-16 90.1 177 41.2
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 6.7e-16 89.0 134 56.7
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.3e-15 86.7 257 42.0
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.3e-15 86.3 164 74.4
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 7.4e-15 85.5 257 53.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.8e-14 83.6 314 51.0
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.1e-13 81.6 260 49.2
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.4e-13 80.5 276 51.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.9e-11 73.6 229 39.7
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.8e-11 73.2 269 40.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-09 67.8 129 43.4
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 3.6e-09 66.6 258 48.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 7.9e-09 65.5 140 41.4
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.0e-08 65.1 257 50.6
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.0e-08 65.1 97 43.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.3e-08 63.9 39 82.1
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 3.7e-06 56.6 149 68.5
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 4.8e-06 56.2 68 51.5


User provided reference genes

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