Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 8.1e-297 1023.1 556 100.0
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 5.1e-291 1003.8 556 93.9
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 2.5e-277 958.4 500 97.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.7e-260 901.0 557 87.1
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.0e-259 898.3 557 86.5
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 8.8e-259 896.7 557 87.1
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 5.0e-254 880.9 564 82.1
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.6e-252 874.8 501 88.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.6e-223 778.1 568 71.7
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 9.8e-218 760.4 509 74.9
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.4e-216 755.7 509 73.7
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.2e-215 753.4 508 74.0
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.6e-215 753.1 502 75.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.1e-213 746.9 501 74.9
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 7.3e-213 744.2 508 72.4
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 1.6e-212 743.0 508 72.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 6.2e-212 741.1 500 74.0
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 6.4e-209 731.1 507 72.4
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.4e-208 729.9 501 72.7
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 4.1e-208 728.4 511 72.0
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 7.1e-208 727.6 509 72.1
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.6e-207 726.5 509 71.3
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 2.1e-207 726.1 495 72.9
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 2.1e-207 726.1 507 72.2
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 2.1e-207 726.1 503 71.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.1e-207 726.1 509 71.7
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 7.8e-207 724.2 509 71.7
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 3.0e-206 722.2 509 70.9
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 3.9e-206 721.8 507 70.6
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 5.1e-206 721.5 509 71.3
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.5e-205 719.9 507 70.4
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.5e-205 719.2 499 72.1
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.5e-205 719.2 503 71.4
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-205 719.2 507 70.4
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 9.5e-205 717.2 505 71.1
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.5e-205 717.2 509 71.1
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.2e-204 716.8 508 70.5
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.6e-204 716.5 506 71.7
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.8e-204 715.7 507 70.2
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.8e-204 715.7 509 70.1
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.2e-204 714.5 507 70.0
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.8e-203 713.0 502 70.3
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-203 712.6 509 70.5
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 3.1e-203 712.2 511 70.1
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 4.4e-202 708.4 504 69.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 7.6e-202 707.6 512 69.3
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 9.9e-202 707.2 504 70.6
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.7e-201 706.4 507 70.0
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.7e-201 706.4 502 70.9
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 2.9e-201 705.7 566 64.3
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 2.9e-201 705.7 503 70.8
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 6.4e-201 704.5 558 65.6
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 8.4e-201 704.1 505 71.1
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.4e-200 703.4 507 69.8
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.9e-200 703.0 512 71.5
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.4e-200 702.6 511 71.8
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 3.2e-200 702.2 506 69.2
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 4.1e-200 701.8 505 70.1
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 5.4e-200 701.4 505 71.1
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 7.1e-200 701.0 502 70.9
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 1.2e-199 700.3 558 64.2
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.6e-199 699.9 497 70.6
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 4.6e-199 698.4 563 65.2
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 4.6e-199 698.4 508 69.1
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 1.3e-198 696.8 506 70.2
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 6.6e-198 694.5 503 70.0
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 6.6e-198 694.5 559 64.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.5e-197 693.3 490 70.6
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.9e-197 693.0 504 70.6
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.3e-197 691.0 506 69.2
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 9.6e-197 690.6 506 69.4
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 1.2e-196 690.3 506 68.4
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.1e-196 689.5 566 64.0
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.1e-196 689.5 501 69.1
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 2.8e-196 689.1 502 69.5
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 3.6e-196 688.7 491 68.8
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 2.4e-195 686.0 504 68.1
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.2e-194 683.7 509 66.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 3.8e-193 678.7 516 67.4
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.6e-191 673.3 507 67.3
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 1.6e-191 673.3 511 67.1
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 4.6e-191 671.8 509 65.8
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.8e-191 671.0 507 67.9
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.0e-190 670.6 505 67.1
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.7e-190 669.8 491 69.2
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.9e-190 668.7 512 66.2
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 6.6e-190 667.9 504 67.1
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 9.6e-189 664.1 510 67.6
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 5.3e-187 658.3 506 67.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 5.3e-187 658.3 515 65.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.3e-187 658.3 509 67.0
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.2e-186 657.1 429 76.7
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 2.6e-186 656.0 511 66.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 3.4e-186 655.6 509 66.6
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 9.9e-186 654.1 509 67.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.2e-185 652.9 506 67.0
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 2.9e-185 652.5 514 64.2
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 8.4e-185 651.0 563 62.0
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 5.4e-184 648.3 508 66.5
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.2e-183 647.1 505 64.0
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 4.6e-183 645.2 507 65.3
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.8e-182 643.3 506 66.0
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.3e-182 642.9 445 71.5
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 7.4e-181 637.9 507 64.9
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.6e-178 629.4 500 64.4
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 9.9e-178 627.5 510 60.2
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.3e-177 627.1 509 63.7
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.9e-177 625.9 500 64.0
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 8.4e-177 624.4 456 68.9
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 4.3e-173 612.1 504 61.1
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 6.2e-172 608.2 504 60.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.1e-171 607.4 511 62.4
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 4.0e-171 605.5 507 59.6
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 5.5e-168 595.1 423 70.7
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 1.2e-162 577.4 513 58.3
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.7e-161 573.5 348 79.9
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 9.3e-160 567.8 431 65.2
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.3e-156 557.4 508 57.5
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.4e-155 553.9 500 60.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.8e-153 545.8 383 69.5
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 3.1e-139 499.6 511 50.5
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.1e-136 491.1 438 55.0
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.7e-135 485.7 408 61.8
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 5.5e-128 462.2 508 49.0
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 4.2e-120 436.0 441 55.6
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.8e-119 433.3 521 43.8
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 8.0e-119 431.8 258 79.1
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 2.3e-110 403.7 445 47.4
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.2e-110 402.5 457 52.7
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.8e-103 380.2 500 46.0
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.5e-101 374.4 544 43.8
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 2.2e-92 344.0 304 55.9
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.3e-88 329.7 326 57.1
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 7.6e-85 318.9 469 39.2
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.1e-78 298.5 380 47.9
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.8e-70 271.2 454 36.8
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.4e-67 260.8 235 60.4
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 3.2e-67 260.4 326 40.8
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.5e-51 207.6 510 32.5
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 5.3e-38 163.3 256 42.6
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.9e-35 154.8 593 25.0
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 2.8e-31 141.0 170 50.0
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-17 95.5 92 60.9
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 7.2e-11 73.2 82 48.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 6.8e-09 66.6 53 67.9


User provided reference genes

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