Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030580 Solanum pennellii HOM05D000349 ORTHO05D001782 4.3e-80 301.2 146 100.0
CAN.G206.106 Capsicum annuum HOM05D000349 ORTHO05D001782 2.5e-35 152.5 95 77.9
PGSC0003DMG403001309 Solanum tuberosum HOM05D000349 ORTHO05D001782 3.6e-34 148.7 94 76.6
Nitab4.5_0000564g0370 Nicotiana tabacum HOM05D000349 ORTHO05D001782 4.6e-34 148.3 95 74.7
Solyc02g087620.3 Solanum lycopersicum HOM05D000349 ORTHO05D001782 7.9e-34 147.5 94 75.5
Sopen02g032370 Solanum pennellii HOM05D000349 ORTHO05D001782 7.9e-34 147.5 94 75.5
Nitab4.5_0002265g0230 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.4e-33 146.7 95 73.7
Peaxi162Scf00129g00546 Petunia axillaris HOM05D000349 ORTHO05D001782 3.0e-33 145.6 95 72.6
GSVIVG01032598001 Vitis vinifera HOM05D000349 ORTHO05D001782 5.1e-33 144.8 95 69.5
Manes.15G175400 Manihot esculenta HOM05D000349 ORTHO05D001782 1.5e-32 143.3 95 68.4
THA.LOC104821051 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 1.9e-32 142.9 95 70.5
Nitab4.5_0000002g0490 Nicotiana tabacum HOM05D000349 ORTHO05D001782 3.3e-32 142.1 116 62.1
THA.LOC104822374 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 5.7e-32 141.4 95 70.5
TPR.G4339 Trifolium pratense HOM05D000349 ORTHO05D001782 5.7e-32 141.4 114 63.2
Peaxi162Scf00700g00725 Petunia axillaris HOM05D000349 ORTHO05D001782 7.4e-32 141.0 95 70.5
Aa31LG5G12310 Aethionema arabicum HOM05D000349 ORTHO05D001782 2.8e-31 139.0 95 69.5
Medtr6g011290 Medicago truncatula HOM05D000349 ORTHO05D001782 2.8e-31 139.0 110 63.6
AL6G25890 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 3.7e-31 138.7 95 68.4
AT5G15070 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 3.7e-31 138.7 95 68.4
arahy.Tifrunner.gnm1.ann1.EK04TZ Arachis hypogaea HOM05D000349 ORTHO05D001782 3.7e-31 138.7 95 70.5
arahy.Tifrunner.gnm1.ann1.F3F8HA Arachis hypogaea HOM05D000349 ORTHO05D001782 3.7e-31 138.7 95 70.5
Glyma.13G065500 Glycine max HOM05D000349 ORTHO05D001782 3.7e-31 138.7 110 64.5
Lj1g0013791 Lotus japonicus HOM05D000349 ORTHO05D001782 3.7e-31 138.7 94 70.2
Lj2g0003395 Lotus japonicus HOM05D000349 ORTHO05D001782 3.7e-31 138.7 110 65.5
Nn3g17106 Nelumbo nucifera HOM05D000349 ORTHO05D001782 3.7e-31 138.7 95 68.4
CSS0003275 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.8e-31 138.3 94 69.1
CSS0031648 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 4.8e-31 138.3 94 69.1
CARHR075720 Cardamine hirsuta HOM05D000349 ORTHO05D001782 4.8e-31 138.3 95 68.4
Thhalv10019952m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 4.8e-31 138.3 95 68.4
Glyma.19G019100 Glycine max HOM05D000349 ORTHO05D001782 4.8e-31 138.3 110 64.5
Hund15653 Selenicereus undatus HOM05D000349 ORTHO05D001782 4.8e-31 138.3 95 70.5
BcaC01g04519 Brassica carinata HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
BcaC09g47646 Brassica carinata HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
A03p32580 Brassica napus HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
C03p39660 Brassica napus HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
BolC1t05950H Brassica oleracea HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
BolC3t16231H Brassica oleracea HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 68.4
CAN.G61.36 Capsicum annuum HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 70.5
Dinv34993 Davidia involucrata HOM05D000349 ORTHO05D001782 6.3e-31 137.9 95 70.5
Aa31LG11G14480 Aethionema arabicum HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
BcaB04g21424 Brassica carinata HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
BNapus_Darmor_BZH_scaffold_119p00140 Brassica napus HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
BNapus_Darmor_BZH_scaffold_133p00160 Brassica napus HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
BNapus_Darmor_BZH_scaffold_97p00290 Brassica napus HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
BraA01t04654Z Brassica rapa HOM05D000349 ORTHO05D001782 8.2e-31 137.5 95 68.4
VMungo0464G1194 Vigna mungo HOM05D000349 ORTHO05D001782 8.2e-31 137.5 110 63.6
Carub.0003s0084 Capsella rubella HOM05D000349 ORTHO05D001782 1.1e-30 137.1 95 67.4
Lalb_Chr02g0159481 Lupinus albus HOM05D000349 ORTHO05D001782 1.1e-30 137.1 109 64.2
Nitab4.5_0003226g0010 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.1e-30 137.1 91 70.3
Sp3g00780 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.1e-30 137.1 95 67.4
Nn4g23012 Nelumbo nucifera HOM05D000349 ORTHO05D001782 1.4e-30 136.7 95 68.4
Sp6g29000 Schrenkiella parvula HOM05D000349 ORTHO05D001782 1.4e-30 136.7 95 67.4
AL3G10930 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 1.8e-30 136.3 95 67.4
BraA03t12427Z Brassica rapa HOM05D000349 ORTHO05D001782 1.8e-30 136.3 95 66.3
CiPaw.03G030700 Carya illinoinensis HOM05D000349 ORTHO05D001782 1.8e-30 136.3 95 69.5
Lalb_Chr06g0175521 Lupinus albus HOM05D000349 ORTHO05D001782 1.8e-30 136.3 95 69.5
RhsimUnG0054600 Rhododendron simsii HOM05D000349 ORTHO05D001782 1.8e-30 136.3 93 69.9
vmacro05748 Vaccinium macrocarpon HOM05D000349 ORTHO05D001782 1.8e-30 136.3 91 71.4
BcaB08g36931 Brassica carinata HOM05D000349 ORTHO05D001782 2.4e-30 136.0 95 66.3
Psat1g076120 Pisum sativum HOM05D000349 ORTHO05D001782 2.4e-30 136.0 110 62.7
RcHm_v2.0_Chr2g0169241 Rosa chinensis HOM05D000349 ORTHO05D001782 2.4e-30 136.0 95 68.4
AT3G01310 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 3.1e-30 135.6 95 67.4
BraA10t44442Z Brassica rapa HOM05D000349 ORTHO05D001782 3.1e-30 135.6 135 51.1
Psat3g194960 Pisum sativum HOM05D000349 ORTHO05D001782 3.1e-30 135.6 95 69.5
BolC9t59048H Brassica oleracea HOM05D000349 ORTHO05D001782 4.1e-30 135.2 135 51.1
Cfa007504 Carpinus fangiana HOM05D000349 ORTHO05D001782 4.1e-30 135.2 95 68.4
CiPaw.04G020400 Carya illinoinensis HOM05D000349 ORTHO05D001782 4.1e-30 135.2 94 69.1
Cc07_g02940 Coffea canephora HOM05D000349 ORTHO05D001782 4.1e-30 135.2 94 67.0
Glyma.18G255000 Glycine max HOM05D000349 ORTHO05D001782 4.1e-30 135.2 95 67.4
Lsat_1_v5_gn_4_179941 Lactuca sativa HOM05D000349 ORTHO05D001782 4.1e-30 135.2 94 68.1
Phvul.004G025600 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 4.1e-30 135.2 110 63.6
A03p06920 Brassica napus HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 65.3
C03p07910 Brassica napus HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 65.3
BraA03t10013Z Brassica rapa HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 65.3
Carub.0006s1324 Capsella rubella HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 66.3
MD17G1046500 Malus domestica HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 67.4
Solyc03g058960.1 Solanum lycopersicum HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 68.4
Sopen03g012920 Solanum pennellii HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 68.4
TWI60G0717 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 66.3
TAR622G1370 Trochodendron aralioides HOM05D000349 ORTHO05D001782 5.3e-30 134.8 95 66.3
BcaB01g05086 Brassica carinata HOM05D000349 ORTHO05D001782 6.9e-30 134.4 95 64.2
BolC3t13288H Brassica oleracea HOM05D000349 ORTHO05D001782 6.9e-30 134.4 95 64.2
Lalb_Chr21g0318991 Lupinus albus HOM05D000349 ORTHO05D001782 6.9e-30 134.4 110 62.7
Sc10g0003860 Simmondsia chinensis HOM05D000349 ORTHO05D001782 6.9e-30 134.4 88 71.6
Thecc.04G073400 Theobroma cacao HOM05D000349 ORTHO05D001782 6.9e-30 134.4 95 67.4
COL.COLO4_25207 Corchorus olitorius HOM05D000349 ORTHO05D001782 9.1e-30 134.0 95 65.3
DCAR_011167 Daucus carota HOM05D000349 ORTHO05D001782 9.1e-30 134.0 94 67.0
FvH4_6g49380 Fragaria vesca HOM05D000349 ORTHO05D001782 9.1e-30 134.0 95 68.4
FAN05G2522 Fragaria x ananassa HOM05D000349 ORTHO05D001782 9.1e-30 134.0 95 68.4
FAN14G0089 Fragaria x ananassa HOM05D000349 ORTHO05D001782 9.1e-30 134.0 95 68.4
TPR.G4268 Trifolium pratense HOM05D000349 ORTHO05D001782 9.1e-30 134.0 94 68.1
A10p23790 Brassica napus HOM05D000349 ORTHO05D001782 1.2e-29 133.7 95 65.3
C09p62100 Brassica napus HOM05D000349 ORTHO05D001782 1.2e-29 133.7 95 65.3
Cpa.g.sc14.46 Carica papaya HOM05D000349 ORTHO05D001782 1.2e-29 133.7 95 67.4
CDE02G3185 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 1.2e-29 133.7 95 64.2
BcaC04g18992 Brassica carinata HOM05D000349 ORTHO05D001782 1.5e-29 133.3 95 65.3
Dinv33714 Davidia involucrata HOM05D000349 ORTHO05D001782 1.5e-29 133.3 95 68.4
FAN02G2291 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.5e-29 133.3 95 68.4
Potri.017G076400 Populus trichocarpa HOM05D000349 ORTHO05D001782 1.5e-29 133.3 95 66.3
Sabra17G0068200 Salix brachista HOM05D000349 ORTHO05D001782 1.5e-29 133.3 95 65.3
CARHR198250 Cardamine hirsuta HOM05D000349 ORTHO05D001782 2.0e-29 132.9 95 64.2
Ca_04097_v3 Cicer arietinum L. HOM05D000349 ORTHO05D001782 2.0e-29 132.9 95 68.4
Ciclev10010963m.g Citrus clementina HOM05D000349 ORTHO05D001782 2.0e-29 132.9 94 67.0
Thhalv10012536m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 2.0e-29 132.9 95 65.3
Potri.004G129900 Populus trichocarpa HOM05D000349 ORTHO05D001782 2.0e-29 132.9 95 67.4
ECA232G0316 Erigeron canadensis HOM05D000349 ORTHO05D001782 2.6e-29 132.5 94 67.0
Gohir.A09G020400 Gossypium hirsutum HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 66.3
Gohir.D09G020000 Gossypium hirsutum HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 66.3
Gorai.006G023400 Gossypium raimondii HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 66.3
PSO478G0063 Papaver somniferum HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 65.3
PSO799G0001 Papaver somniferum HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 65.3
Phvul.008G044100 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 67.4
VMungo1383G3294 Vigna mungo HOM05D000349 ORTHO05D001782 2.6e-29 132.5 95 67.4
Ah.10g031240 Amaranthus hybridus HOM05D000349 ORTHO05D001782 3.4e-29 132.1 95 65.3
EL10Ac2g02930 Beta vulgaris HOM05D000349 ORTHO05D001782 3.4e-29 132.1 95 65.3
Eucgr.J02137 Eucalyptus grandis HOM05D000349 ORTHO05D001782 3.4e-29 132.1 95 65.3
Medtr7g009060 Medicago truncatula HOM05D000349 ORTHO05D001782 3.4e-29 132.1 95 68.4
PGR142G4016 Punica granatum HOM05D000349 ORTHO05D001782 3.4e-29 132.1 95 66.3
HPP92_012247 Vanilla planifolia HOM05D000349 ORTHO05D001782 3.4e-29 132.1 94 67.0
Actinidia06066 Actinidia chinensis HOM05D000349 ORTHO05D001782 4.5e-29 131.7 94 67.0
HanXRQChr14g0449361 Helianthus annuus HOM05D000349 ORTHO05D001782 4.5e-29 131.7 94 66.0
Prupe.3G272600 Prunus persica HOM05D000349 ORTHO05D001782 4.5e-29 131.7 95 66.3
CSS0004801 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 5.9e-29 131.3 95 67.4
CSS0006610 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 5.9e-29 131.3 95 67.4
CDE06G1135 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 5.9e-29 131.3 95 63.2
Glyma.09G241100 Glycine max HOM05D000349 ORTHO05D001782 5.9e-29 131.3 95 67.4
SGA_v2.0_scaffold205G41756 Striga asiatica HOM05D000349 ORTHO05D001782 5.9e-29 131.3 94 67.0
TWI32G0660 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 5.9e-29 131.3 95 66.3
Gohir.A05G364500 Gossypium hirsutum HOM05D000349 ORTHO05D001782 7.7e-29 131.0 95 65.3
Duzib147G1141 Durio zibethinus HOM05D000349 ORTHO05D001782 1.0e-28 130.6 94 64.9
TAR629G2859 Trochodendron aralioides HOM05D000349 ORTHO05D001782 1.0e-28 130.6 95 66.3
HanXRQChr02g0056461 Helianthus annuus HOM05D000349 ORTHO05D001782 1.3e-28 130.2 94 66.0
CANSAT64G1270 Cannabis sativa HOM05D000349 ORTHO05D001782 2.2e-28 129.4 94 66.0
Migut.H00886 Erythranthe guttata HOM05D000349 ORTHO05D001782 2.2e-28 129.4 94 66.0
ATR0709G022 Amborella trichopoda HOM05D000349 ORTHO05D001782 2.9e-28 129.0 95 64.2
MSTRG.3314 Avicennia marina HOM05D000349 ORTHO05D001782 2.9e-28 129.0 95 65.3
Eucgr.I01909 Eucalyptus grandis HOM05D000349 ORTHO05D001782 6.5e-28 127.9 95 66.3
Gorai.012G055700 Gossypium raimondii HOM05D000349 ORTHO05D001782 6.5e-28 127.9 95 64.2
Os03g0689100 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 6.5e-28 127.9 87 67.8
MELO3C021971.2 Cucumis melo HOM05D000349 ORTHO05D001782 8.5e-28 127.5 91 65.9
CsaV3_5G037840 Cucumis sativus L. HOM05D000349 ORTHO05D001782 8.5e-28 127.5 91 65.9
HanXRQChr09g0265651 Helianthus annuus HOM05D000349 ORTHO05D001782 8.5e-28 127.5 94 64.9
Duzib187G1387 Durio zibethinus HOM05D000349 ORTHO05D001782 1.1e-27 127.1 94 63.8
PGR142G2597 Punica granatum HOM05D000349 ORTHO05D001782 1.1e-27 127.1 95 64.2
PGR083G1519 Punica granatum HOM05D000349 ORTHO05D001782 1.4e-27 126.7 95 63.2
unitig_748.g8619 Utricularia gibba HOM05D000349 ORTHO05D001782 1.9e-27 126.3 91 65.9
Zm00001eb053420 Zea mays HOM05D000349 ORTHO05D001782 5.5e-27 124.8 87 65.5
SalBow1G6919 Salvia bowleyana HOM05D000349 ORTHO05D001782 9.4e-27 124.0 94 63.8
Aqoxy3G00794 Aquilegia oxysepala HOM05D000349 ORTHO05D001782 1.2e-26 123.6 95 62.1
Migut.K01337 Erythranthe guttata HOM05D000349 ORTHO05D001782 1.2e-26 123.6 95 63.2
Os01g0777700 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 1.2e-26 123.6 91 61.5
Sed0019591 Sechium edule HOM05D000349 ORTHO05D001782 1.2e-26 123.6 91 63.7
MSTRG.15490 Avicennia marina HOM05D000349 ORTHO05D001782 2.7e-26 122.5 95 62.1
Gohir.D04G050300 Gossypium hirsutum HOM05D000349 ORTHO05D001782 4.7e-26 121.7 95 63.2
unitig_32.g11779 Utricularia gibba HOM05D000349 ORTHO05D001782 4.7e-26 121.7 91 62.6
Mapoly0013s0108 Marchantia polymorpha HOM05D000349 ORTHO05D001782 2.3e-25 119.4 95 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3169 Anthoceros agrestis HOM05D000349 ORTHO05D001782 8.8e-25 117.5 88 62.5
Pp3c3_34460 Physcomitrium patens HOM05D000349 ORTHO05D001782 8.8e-25 117.5 87 60.9
SGA_v2.0_scaffold224G42952 Striga asiatica HOM05D000349 ORTHO05D001782 8.8e-25 117.5 116 55.2
SHI24098 Sapria himalayana HOM05D000349 ORTHO05D001782 1.5e-24 116.7 95 61.1
ClCG09G018430 Citrullus lanatus HOM05D000349 ORTHO05D001782 3.7e-23 112.1 112 51.8
MBI01_g01234_MAGBIO Magnolia biondii HOM05D000349 ORTHO05D001782 3.7e-23 112.1 111 54.1
Atru.chr8.2477 Acer truncatum HOM05D000349 ORTHO05D001782 4.8e-23 111.7 77 67.5
Pp3c12_13560 Physcomitrium patens HOM05D000349 ORTHO05D001782 1.8e-22 109.8 87 57.5
Lj7A402T46 Lonicera japonica HOM05D000349 ORTHO05D001782 1.3e-20 103.6 72 66.7
CBR_g24415 Chara braunii HOM05D000349 ORTHO05D001782 2.1e-18 96.3 94 46.8
Haze_14589 Corylus avellana HOM05D000349 ORTHO05D001782 1.3e-15 87.0 98 49.0
HPP92_019603 Vanilla planifolia HOM05D000349 ORTHO05D001782 2.2e-15 86.3 48 81.2
Actinidia36030 Actinidia chinensis HOM05D000349 ORTHO05D001782 8.2e-15 84.3 79 55.7
Hund13248 Selenicereus undatus HOM05D000349 ORTHO05D001782 1.1e-14 84.0 49 77.6
PRCOL_00003213 Prasinoderma coloniale HOM05D000349 ORTHO05D001782 5.3e-14 81.6 86 46.5
Haze_26771 Corylus avellana HOM05D000349 ORTHO05D001782 3.5e-13 79.0 95 43.2
SMO164G0156 Selaginella moellendorffii HOM05D000349 ORTHO05D001782 8.5e-12 74.3 57 64.9
MCO07G464 Micromonas commoda HOM05D000349 ORTHO05D001782 1.1e-11 73.9 117 39.3
Solyc10g079960.1 Solanum lycopersicum HOM05D000349 ORTHO05D001782 1.5e-11 73.6 38 97.4
Cre01.g052650 Chlamydomonas reinhardtii HOM05D000349 ORTHO05D001782 4.7e-10 68.6 96 40.6
Cre03.g185500 Chlamydomonas reinhardtii HOM05D000349 ORTHO05D001782 1.7e-07 60.1 85 41.2
AUR62031653 Chenopodium quinoa HOM05D000349 ORTHO05D001782 2.8e-07 59.3 95 38.9
arahy.Tifrunner.gnm1.ann1.9TZF0D Arachis hypogaea HOM05D000349 ORTHO05D001782 6.3e-07 58.2 111 37.8
AUR62018295 Chenopodium quinoa HOM05D000349 ORTHO05D001782 6.3e-07 58.2 95 37.9
Lsat_1_v5_gn_5_106820 Lactuca sativa HOM05D005961 ORTHO05D007391 8.2e-07 57.8 45 57.8


User provided reference genes

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