Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.3e-40 167.9 85 100.0
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.3e-40 167.9 85 100.0
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 4.8e-39 164.1 84 97.6
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.0e-37 158.7 85 91.8
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.6e-34 149.1 80 92.5
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.9e-27 125.6 72 86.1
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 5.6e-24 114.0 71 74.6
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 7.4e-24 113.6 75 70.7
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.6e-23 112.5 72 72.2
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.8e-23 111.7 81 69.1
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 6.2e-23 110.5 71 74.6
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 8.2e-23 110.2 71 74.6
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-22 109.8 75 69.3
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.4e-22 109.4 72 70.8
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 1.4e-22 109.4 71 73.2
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.8e-22 109.0 64 76.6
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 3.1e-22 108.2 71 73.2
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 6.9e-22 107.1 74 64.9
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 9.0e-22 106.7 71 71.8
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.2e-21 106.3 71 73.2
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.2e-21 106.3 84 65.5
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 2.0e-21 105.5 71 71.8
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 2.6e-21 105.1 71 69.0
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 4.5e-21 104.4 71 71.8
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 4.5e-21 104.4 71 64.8
PGSC0003DMG400029826 Solanum tuberosum HOM05D007721 ORTHO05D009811 5.8e-21 104.0 73 78.1
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 1.0e-20 103.2 71 69.0
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 1.3e-20 102.8 74 63.5
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.3e-20 102.8 74 66.2
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.7e-20 102.4 71 67.6
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.7e-20 102.4 71 69.0
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.9e-20 101.7 64 76.6
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 3.8e-20 101.3 71 66.2
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 3.8e-20 101.3 74 60.8
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 4.9e-20 100.9 64 73.4
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 4.9e-20 100.9 74 60.8
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.9e-20 100.9 76 63.2
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.9e-20 100.9 81 59.3
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 4.9e-20 100.9 64 76.6
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 4.9e-20 100.9 71 67.6
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 4.9e-20 100.9 71 67.6
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 1.4e-19 99.4 68 69.1
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 1.4e-19 99.4 71 66.2
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.4e-19 99.4 71 66.2
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 1.9e-19 99.0 74 63.5
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 4.2e-19 97.8 74 63.5
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 4.2e-19 97.8 85 58.8
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 4.2e-19 97.8 71 63.4
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 5.5e-19 97.4 82 61.0
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 1.2e-18 96.3 74 59.5
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 1.2e-18 96.3 71 62.0
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.2e-18 96.3 75 61.3
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 1.6e-18 95.9 74 59.5
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 1.6e-18 95.9 74 60.8
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 2.1e-18 95.5 74 60.8
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 3.5e-18 94.7 71 66.2
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 7.9e-18 93.6 71 60.6
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 3.9e-17 91.3 75 58.7
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 5.1e-17 90.9 53 79.2
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 5.1e-17 90.9 53 79.2
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 6.7e-17 90.5 77 57.1
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 6.7e-17 90.5 75 58.7
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 1.1e-16 89.7 72 59.7
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.5e-16 88.6 71 60.6
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 3.3e-16 88.2 72 58.3
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 3.3e-16 88.2 71 59.2
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 7.4e-16 87.0 71 57.7
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 7.4e-16 87.0 77 54.5
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 9.7e-16 86.7 72 58.3
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 1.3e-15 86.3 72 56.9
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 1.3e-15 86.3 72 58.3
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.6e-15 85.9 72 56.9
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 6.3e-15 84.0 72 56.9
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 8.2e-15 83.6 64 71.9
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 1.1e-14 83.2 72 55.6
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 3.1e-14 81.6 56 73.2
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 2.6e-13 78.6 72 58.3
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 3.8e-12 74.7 71 49.3
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 3.2e-11 71.6 71 50.7
DCAR_024676 Daucus carota HOM05D007721 ORTHO05D009811 3.7e-07 58.2 63 46.0
arahy.Tifrunner.gnm1.ann1.K7RUU1 Arachis hypogaea HOM05D007721 ORTHO05D009811 2.4e-06 55.5 29 79.3
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 3.1e-06 55.1 42 59.5


User provided reference genes

Program Settings