Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 4.7e-70 267.7 131 100.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.8e-68 260.8 131 98.5
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.1e-66 254.6 131 95.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-63 246.1 131 90.1
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.3e-59 233.0 124 88.7
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.4e-58 227.6 127 85.0
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.6e-57 226.1 128 82.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.0e-56 221.9 127 81.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.9e-56 221.5 126 83.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.9e-56 221.5 126 83.3
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.1e-56 221.1 123 87.0
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.1e-56 221.1 127 80.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.1e-55 219.9 124 82.3
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 4.3e-55 218.0 126 79.4
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.6e-55 217.6 127 82.7
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.6e-54 216.1 126 81.7
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.1e-54 215.7 129 81.4
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.8e-54 215.3 127 80.3
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.6e-54 214.9 127 81.1
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.6e-54 214.9 128 76.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.4e-53 213.0 130 74.6
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.3e-53 212.2 126 81.0
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.3e-53 212.2 122 80.3
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.3e-53 212.2 126 81.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.1e-53 211.8 124 79.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 5.2e-53 211.1 129 78.3
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.2e-53 211.1 123 76.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 5.2e-53 211.1 126 77.8
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 8.9e-53 210.3 127 77.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.2e-52 209.9 129 77.5
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.5e-52 209.5 131 74.8
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.0e-52 209.1 129 78.3
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.0e-52 209.1 126 78.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.0e-52 209.1 127 77.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.4e-52 208.0 130 76.9
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.4e-52 208.0 122 77.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-51 206.5 119 80.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.7e-51 206.1 123 78.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-51 205.7 129 76.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.9e-51 205.3 126 78.6
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.9e-51 205.3 123 78.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.9e-51 205.3 118 79.7
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 3.7e-51 204.9 126 78.6
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.7e-51 204.9 126 78.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.9e-51 204.5 122 79.5
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 6.4e-51 204.1 125 77.6
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.4e-51 204.1 129 75.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.4e-51 203.8 129 76.0
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.4e-51 203.8 129 76.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 8.4e-51 203.8 140 71.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.1e-50 203.4 121 77.7
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-50 202.6 129 74.4
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.4e-50 202.2 124 77.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.4e-50 202.2 126 77.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.2e-50 201.8 126 77.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.1e-50 201.4 123 78.9
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.1e-50 200.7 124 78.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-49 199.5 123 78.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.6e-49 199.5 119 79.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.7e-49 198.7 126 76.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.7e-49 198.7 129 73.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.5e-49 198.4 130 74.6
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.6e-49 198.0 123 78.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 6.0e-49 197.6 123 74.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.3e-48 195.7 131 72.5
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.0e-48 195.3 127 74.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.6e-48 194.1 120 77.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.9e-47 192.6 122 73.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.5e-47 192.2 118 75.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.3e-47 191.8 125 72.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 9.6e-47 190.3 128 68.8
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.6e-46 189.5 125 72.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.6e-46 189.5 123 75.6
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.8e-46 188.7 126 66.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 6.2e-46 187.6 123 70.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.1e-46 187.2 120 73.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-45 186.8 120 73.3
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.8e-45 186.0 121 76.9
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.4e-45 185.7 122 69.7
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.1e-45 185.3 120 72.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.0e-45 184.9 121 72.7
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 6.8e-45 184.1 129 73.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 6.8e-45 184.1 121 68.6
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.9e-45 183.7 120 71.7
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.9e-45 183.7 120 74.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 8.9e-45 183.7 120 73.3
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.5e-44 183.0 113 74.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.5e-44 183.0 120 73.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.0e-44 182.6 109 81.7
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.8e-44 181.0 120 69.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.6e-44 180.6 123 66.7
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.9e-44 180.3 101 79.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.9e-43 177.9 123 67.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 4.9e-43 177.9 119 69.7
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-42 176.8 124 64.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-42 176.8 124 64.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-42 176.4 132 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.9e-42 176.0 126 63.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.2e-42 174.9 120 69.2
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 4.2e-42 174.9 119 68.1
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.4e-42 174.5 118 68.6
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.4e-42 174.5 123 65.9
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 7.1e-42 174.1 120 69.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 9.3e-42 173.7 126 64.3
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.3e-42 173.7 123 67.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.6e-41 172.9 120 68.3
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 124 62.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.5e-41 171.8 120 69.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 6.0e-41 171.0 113 70.8
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 7.8e-41 170.6 120 67.5
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-40 169.9 120 70.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.9e-40 168.3 118 61.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.1e-40 167.9 110 73.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.7e-40 167.2 107 73.8
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-39 166.4 127 62.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.9e-39 166.0 124 63.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.9e-39 166.0 124 64.5
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.5e-39 165.6 126 67.5
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 4.3e-39 164.9 124 62.1
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.3e-39 164.9 118 66.1
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 4.3e-39 164.9 119 65.5
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.6e-39 164.5 108 65.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 7.3e-39 164.1 124 63.7
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 7.3e-39 164.1 124 63.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 4.8e-38 161.4 125 61.6
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.4e-37 159.8 127 59.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 61.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 61.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 61.0
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.4e-37 159.1 120 61.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.1e-37 158.7 123 61.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.5e-36 156.4 119 61.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.0e-36 156.0 121 61.2
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-36 156.0 123 61.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.0e-36 156.0 116 62.1
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 5.8e-36 154.5 120 60.8
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.8e-36 154.5 119 58.8
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.3e-35 153.3 132 59.1
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.2e-35 152.5 121 61.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 3.8e-35 151.8 118 61.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 3.8e-35 151.8 118 61.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.9e-35 151.4 118 61.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.4e-34 149.1 118 61.0
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.2e-34 148.7 121 57.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.4e-34 147.9 123 57.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 5.4e-34 147.9 118 61.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 5.4e-34 147.9 118 61.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.4e-34 147.9 119 57.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 9.3e-34 147.1 121 63.6
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.2e-33 146.7 123 58.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.6e-33 146.4 123 58.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.1e-33 146.0 99 68.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.6e-33 144.8 121 58.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-32 143.3 122 56.6
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.3e-31 138.7 120 58.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.8e-30 135.6 119 53.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-29 133.7 119 55.5
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.9e-26 122.9 79 70.9
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.1e-25 119.4 63 85.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.5e-23 112.5 82 75.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-22 110.2 59 84.7
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.8e-22 108.2 64 79.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.8e-22 108.2 64 79.7
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.4e-21 106.7 65 75.4
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-19 99.8 65 76.9
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 6.5e-19 97.8 62 77.4
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 6.5e-19 97.8 69 73.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.9e-18 96.3 53 75.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.7e-17 92.4 112 42.0
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-15 86.7 53 75.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.5e-15 85.9 64 67.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.7e-15 84.7 62 58.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-14 83.2 58 72.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.7e-14 82.0 121 38.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 6.9e-13 77.8 59 61.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.9e-11 72.4 68 52.9
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.1e-09 64.7 64 48.4
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 2.3e-08 62.8 38 78.9
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 3.7e-06 55.5 31 77.4


User provided reference genes

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